ViewGene
Locus Name:
GeneID:
Location:

GeneID:1979
TrivialName: PA14_51220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51220
PAO1 Ortholog Locus:PA1014
Sequence Length:993
Protein Length:330
Start: 4552635
Stop: 4551643
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04403.1|AE004534_1 (AE004534) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 330/330 (100%), Positives = 330/330 (100%)
Sequence:
GTGTGGCCGAGCTGCATGGCACGGTTTCCTTCCGACGGGCAGCCAGGTTATCGGTTTGTGCCGAGTCCCGGA
TCCGGGGCTGGGGAGGAAGAAATGCGTCCGCTCGTTTCCGTCGTTTGCGCCTGTTTCAATATCTCGAAGTAT
CTGGACGAGGCGATCGCCAGCATCTACGCGCAGGGCTATCCCAATCTCGAGTTGATCGTGGTGGATGACGGA
TCCACGGACGACACCTATGAGCGTCTCGCCATGCTCCGCGAGCGTCACGGCTTCCAGCTCTACCGCCAGGCT
AACCGAGGGGTGAGCGACGCGCTCAATCACGGTTTGCGTCATGCGCGGGGCGAGTTCGTGATGACTCCCGAC
CTGGACGACATTCTCCTGCCTGGAGCGCTCGACACGCGCGTCGACTACTTGCTTGCGCACCCCGAGGTCGGG
TGCGTGGGCGGTTTCAATATCTGTATCGACAGTGCTGGTAACGAAGTGGCGCGAGACGGTTTCAGCGAGGGG
TGTGTGGAGCGTTGGGGGTTCGATGCAGCATTGGCCGAGACCCTGGTGGTCATGCCGCTGACGGCGCTCTAC
CGCATGGAAGCGATGAAGCGGGCGGATTTCTTCGACCCGTCGATTCGCGTGCAGGATTTCCAGATCACCCTA
AGGATCGCGGCGCAGGGCTATGAAATTCATCGACTGCCGGCCTACATGGGGCGTTATCGCCGGCATGGAAGC
GGTCTGTCCGGCAGGTACAAGCTCAATTACGAGGCGGATATGCAAGCCATTGAGCCTTATCGGGCTCACCCG
AATTATCGCCGGGCCCGGCAACTGATCCTGAACAAGGCGCTGAAGAAGGCTGTTGTCCAGGATGGGCGATAT
GCCTGGCAGTTGTTCCGCTCGGTGCCGCTGAGGGCGTGGGACCGGGTGACGCTGAAGCGATTCTGGCGCTTT
CTCCGTTATCTGCCGGTCCTCGGGTTGAAAGGTGGTACCGGCGTCGAGGGTCGATGA
Translation:
MWPSCMARFPSDGQPGYRFVPSPGSGAGEEEMRPLVSVVCACFNISKYLDEAIASIYAQGYPNLELIVVDDG
STDDTYERLAMLRERHGFQLYRQANRGVSDALNHGLRHARGEFVMTPDLDDILLPGALDTRVDYLLAHPEVG
CVGGFNICIDSAGNEVARDGFSEGCVERWGFDAALAETLVVMPLTALYRMEAMKRADFFDPSIRVQDFQITL
RIAAQGYEIHRLPAYMGRYRRHGSGLSGRYKLNYEADMQAIEPYRAHPNYRRARQLILNKALKKAVVQDGRY
AWQLFRSVPLRAWDRVTLKRFWRFLRYLPVLGLKGGTGVEGR*
AnnotationID:1988GeneID:1979
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:probable glycosyl transferase
Cell Localization:()
Synonyms:PA1014
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00535, Glycos_transf_2, Glycosyl transferase. Score: 99.5, 5e-22
COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis. Score: 88.3, 1e-18
COG1216, COG1216, Predicted glycosyltransferases. Score: 78.6, 1e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:14471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1979
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3442
                           PA1014_tr
                           translation of PA1014
                           330
                           99.99
                           99.99
                           0
                           1752.0
     

     
     
105714
                           gb|AAG04403.1|AE004534_1
                           (AE004534) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           330
                           99.69
                           99.99
                           0
                           1749.0
     

     
     
3443
                           PA0705_tr
                           translation of PA0705
                           334
                           49.40
                           61.67
                           39
                           820.0
     

     
     
105715
                           gb|AAG04094.1|AE004506_4
                           (AE004506) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           334
                           49.40
                           61.67
                           39
                           820.0
     

     
     
105716
                           gb|AAC44786.1|
                           (U70729) MigA [Pseudomonas aeruginosa]
                           334
                           48.80
                           61.07
                           39
                           811.0
     

     






      

          
GC ORFID: 44981How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1014Glimmer Score: 

          
Start: 401272Stop: 402264

          
Length: 993


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1014 translation of PA1014Homolog Bit Score 679.0

          
Other Homologs:  t_PA0705 (ORF: BLASTX 325.0), psyr_15may02_Scaffold3_revised_gene4445 (ORF: BLASTX 288.0), t_PA1014 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTGGCCGAGCTGCATGGCACGGTTTCCTTCCGACGGGCAGCCAGGTTATCGGTTTGTGCCGAGTCCCGGA 
TCCGGGGCTGGGGAGGAAGAAATGCGTCCGCTCGTTTCCGTCGTTTGCGCCTGTTTCAATATCTCGAAGTAT 
CTGGACGAGGCGATCGCCAGCATCTACGCGCAGGGCTATCCCAATCTCGAGTTGATCGTGGTGGATGACGGA 
TCCACGGACGACACCTATGAGCGTCTCGCCATGCTCCGCGAGCGTCACGGCTTCCAGCTCTACCGCCAGGCT 
AACCGAGGGGTGAGCGACGCGCTCAATCACGGTTTGCGTCATGCGCGGGGCGAGTTCGTGATGACTCCCGAC 
CTGGACGACATTCTCCTGCCTGGAGCGCTCGACACGCGCGTCGACTACTTGCTTGCGCACCCCGAGGTCGGG 
TGCGTGGGCGGTTTCAATATCTGTATCGACAGTGCTGGTAACGAAGTGGCGCGAGACGGTTTCAGCGAGGGG 
TGTGTGGAGCGTTGGGGGTTCGATGCAGCATTGGCCGAGACCCTGGTGGTCATGCCGCTGACGGCGCTCTAC 
CGCATGGAAGCGATGAAGCGGGCGGATTTCTTCGACCCGTCGATTCGCGTGCAGGATTTCCAGATCACCCTA 
AGGATCGCGGCGCAGGGCTATGAAATTCATCGACTGCCGGCCTACATGGGGCGTTATCGCCGGCATGGAAGC 
GGTCTGTCCGGCAGGTACAAGCTCAATTACGAGGCGGATATGCAAGCCATTGAGCCTTATCGGGCTCACCCG 
AATTATCGCCGGGCCCGGCAACTGATCCTGAACAAGGCGCTGAAGAAGGCTGTTGTCCAGGATGGGCGATAT 
GCCTGGCAGTTGTTCCGCTCGGTGCCGCTGAGGGCGTGGGACCGGGTGACGCTGAAGCGATTCTGGCGCTTT 
CTCCGTTATCTGCCGGTCCTCGGGTTGAAAGGTGGTACCGGCGTCGAGGGTCGATGA