ViewGene
Locus Name:
GeneID:
Location:

GeneID:1978
TrivialName: PA14_36060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36060
PAO1 Ortholog Locus:PA2216
Sequence Length:996
Protein Length:331
Start: 3212621
Stop: 3211626
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05604.1|AE004648_3 (AE004648) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 330/331 (99%), Positives = 330/331 (99%)
Sequence:
ATGCGGCTGATTCAATTCGAGGACCGGGCAGGGCAGCGCCGGGTCGGCGTCGTCGAAGGCGCCGGGATACAG
GTGCTGCGCGGCGTGCGCAGCACGCGCGAACTGGGGCTGGCGGCGATTCGCGCGGGCAGCGGCCTGCACGAC
GAGGTGCTGCGCCGAGGCAGCGAGCCAGGCCCGGACTATGCCGGGTTGCTGGAGGAGGGAAGGGTGCTGCCG
CCGCTGGATCATGACGACCCGGCCCATTGCCTGGTCAGCGGCACCGGCCTGACCCACCTGGGCAGCGCCGCG
ACGCGCGACCGCATGCACCAGCAGAACCAGGGCGACGAGACCGCGCTGACCGACACCATGCGCATCTTCAGG
TGGGGCCTGGAGGGCGGCAAGCCACCGGCGGGCCAGGTCGGCGCGCAGCCTGAATGGTTCTACAAGGGCGAC
GGCGGCATCGTCGTGCGCCCCGGCGCGGACTTCCCGCTACCGGCCTTCGCCGAGGACGCCGGCGAGGAACCG
GAGCTGGTCGGGCTCTACCTGATCGGCGATGACCGCCGGCCTTACCGGCTCGGCTACGCCCTGGGCAACGAG
TTCTCCGACCACCTGATGGAGCGCCGCAACTACCTGTACCTGGCGCATTCCAAGCTACGCGCCTGCTGCTAC
GGGCCGGAGCTGCGAGTCGGCGAACTGCCGCGCCACCTGCAGGGCGAGAGCCGGATCCTGCGCGACGGCGAA
GTGCTCTGGCAGCAGGCGTTCCTTTCCGGCGAGGACAACATGTGCCACAGCCTGGAGAACCTCGAGTACCAC
CATTTCAAGTACGCGCAGTTCCTCCGTCCGGGCGACGTCCACGTGCATTACTTCGGTACCGCCACGCTGTCC
TTCGCCGACGGGATCAAGGCTGCTCCGGGGGATGTCTTCGAGATCGCCATGACCGAGTTCGGCGCGCCGCTG
CGCAATGGCATCGCCGCCGTCGAGACCGCACTGACGCCGGGGCGGGTGGTAGCGCTCTGA
Translation:
MRLIQFEDRAGQRRVGVVEGAGIQVLRGVRSTRELGLAAIRAGSGLHDEVLRRGSEPGPDYAGLLEEGRVLP
PLDHDDPAHCLVSGTGLTHLGSAATRDRMHQQNQGDETALTDTMRIFRWGLEGGKPPAGQVGAQPEWFYKGD
GGIVVRPGADFPLPAFAEDAGEEPELVGLYLIGDDRRPYRLGYALGNEFSDHLMERRNYLYLAHSKLRACCY
GPELRVGELPRHLQGESRILRDGEVLWQQAFLSGEDNMCHSLENLEYHHFKYAQFLRPGDVHVHYFGTATLS
FADGIKAAPGDVFEIAMTEFGAPLRNGIAAVETALTPGRVVAL*
AnnotationID:1987GeneID:1978
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 04:04:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2216
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3959




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32537




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1978_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1978
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3441
                           PA2216_tr
                           translation of PA2216
                           331
                           99.69
                           99.69
                           0
                           1754.0
     

     
     
105703
                           gb|AAG05604.1|AE004648_3
                           (AE004648) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           331
                           99.69
                           99.69
                           0
                           1754.0
     

     
     
105704
                           gb|AAO57239.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           331
                           70.69
                           81.87
                           1
                           1258.0
     

     
     
105707
                           gb|AAN34114.1|AE014587_9
                           (AE014587) conserved hypothetical protein [Brucella suis 1330]
                           339
                           53.39
                           65.19
                           17
                           900.0
     

     
     
105706
                           gb|AAL53596.1|
                           (AE009673) SUGAR TRANSPORTER [Brucella melitensis 16M]
                           346
                           52.60
                           64.16
                           24
                           908.0
     

     






      

          
GC ORFID: 44980How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2216Glimmer Score: 

          
Start: 1741295Stop: 1742290

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2216 translation of PA2216Homolog Bit Score 680.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene741 (ORF: BLASTX 488.0), t_PA2216 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCTGATTCAATTCGAGGACCGGGCAGGGCAGCGCCGGGTCGGCGTCGTCGAAGGCGCCGGGATACAG 
GTGCTGCGCGGCGTGCGCAGCACGCGCGAACTGGGGCTGGCGGCGATTCGCGCGGGCAGCGGCCTGCACGAC 
GAGGTGCTGCGCCGAGGCAGCGAGCCAGGCCCGGACTATGCCGGGTTGCTGGAGGAGGGAAGGGTGCTGCCG 
CCGCTGGATCATGACGACCCGGCCCATTGCCTGGTCAGCGGCACCGGCCTGACCCACCTGGGCAGCGCCGCG 
ACGCGCGACCGCATGCACCAGCAGAACCAGGGCGACGAGACCGCGCTGACCGACACCATGCGCATCTTCAGG 
TGGGGCCTGGAGGGCGGCAAGCCACCGGCGGGCCAGGTCGGCGCGCAGCCTGAATGGTTCTACAAGGGCGAC 
GGCGGCATCGTCGTGCGCCCCGGCGCGGACTTCCCGCTACCGGCCTTCGCCGAGGACGCCGGCGAGGAACCG 
GAGCTGGTCGGGCTCTACCTGATCGGCGATGACCGCCGGCCTTACCGGCTCGGCTACGCCCTGGGCAACGAG 
TTCTCCGACCACCTGATGGAGCGCCGCAACTACCTGTACCTGGCGCATTCCAAGCTACGCGCCTGCTGCTAC 
GGGCCGGAGCTGCGAGTCGGCGAACTGCCGCGCCACCTGCAGGGCGAGAGCCGGATCCTGCGCGACGGCGAA 
GTGCTCTGGCAGCAGGCGTTCCTTTCCGGCGAGGACAACATGTGCCACAGCCTGGAGAACCTCGAGTACCAC 
CATTTCAAGTACGCGCAGTTCCTCCGTCCGGGCGACGTCCACGTGCATTACTTCGGTACCGCCACGCTGTCC 
TTCGCCGACGGGATCAAGGCTGCTCCGGGGGATGTCTTCGAGATCGCCATGACCGAGTTCGGCGCGCCGCTG 
CGCAATGGCATCGCCGCCGTCGAGACCGCACTGACGCCGGGGCGGGTGGTAGCGCTCTGA