ViewGene
Locus Name:
GeneID:
Location:

GeneID:1977
TrivialName: PA14_40730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40730
PAO1 Ortholog Locus:PA1839
Sequence Length:1041
Protein Length:346
Start: 3636128
Stop: 3637168
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05228.1|AE004610_1 (AE004610) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 344/346 (99%), Positives = 344/346 (99%)
Sequence:
ATGCGTAGCCAAGACCTCCACCAGCGCCTCGCCGATCTCGGCGCCAAGCCCCTGCATTGCGGGAGGATCGTC
CGCGCCTGGCTGCAGGGCCGCGCCCTCGATGCCTGCACCGCCCGCCAGCCGGCCGAGGACTTCCTGCCGCTG
GGCGTACGCCACGGTCTGCCCCAGGTAGCCGCGGAACTGGAAGGCATCGCCCGCCTGCACAGCGAGCATCCG
GCGAGCGACGGCTCGTCGCGCCTGCTGGTGGAACTGGCCGACCGGCAGATGGTGGAAAGCGTGCTGCTGCCG
CGCGGTGGGCTGTGCGTCTCGACCCAGGTCGGCTGCGCGGTCGGCTGCGTGTTCTGCATGACCGGCCGCAGC
GGCCTGCTGCGCCAGGTCGGCAGCCTGGAGATGGTCGCCCAGGTGGTCCTGGCGCGGCGTCGGCGAGCGGTG
AAGAAAGTGGTGTTCATGGGCATGGGCGAGCCGGCGCACAACCTCGACAACGTCCTCGAAGCCATCGACCTG
CTCGGCACCGATGGCGGCATCGGCCACAAGAACCTGGTGTTCTCCACCGTCGGCGATCCCCGCGTGTTCGAG
CGCCTGCCCCTGCAACGGGTGAAGCCCGCCCTCGCCCTGTCCCTGCACAGCACCCGCGCCGAACTGCGCCGG
CAACTGTTGCCCAAGGCGCCGCCGCTGAGCCCGGAAGAACTGGTGGAAGCCGGCGAGGCCTACGCCCGCCGG
GTCGACTATCCGATCCAGTACCAATGGACCCTGCTCGAAGGGATCAACGACAGCCTGGAGGAAATGGACGGC
ATCCTGCGCCTGCTCAAGGGCCGCTTCGCGGTGATGAACCTGATCCCCTACAACAGCATGGACGGCGACGCC
TACCGGCGCCCGAGCGGGGAGCGGATCGTCGAGCTGGTGCGCTACCTGCACAGCCGCGGCGTGCTGACCAAG
GTGCGCAACTCGGCCGGCCAGGACATCGACGGCGGCTGCGGGCAACTGCGCGCCAGGGCCACGCAGGGCACG
GCGGAACGGCGCATCCCCGCCCGCCAGGCCTGA
Translation:
MRSQDLHQRLADLGAKPLHCGRIVRAWLQGRALDACTARQPAEDFLPLGVRHGLPQVAAELEGIARLHSEHP
ASDGSSRLLVELADRQMVESVLLPRGGLCVSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRRRAV
KKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGHKNLVFSTVGDPRVFERLPLQRVKPALALSLHSTRAELRR
QLLPKAPPLSPEELVEAGEAYARRVDYPIQYQWTLLEGINDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDA
YRRPSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCGQLRARATQGTAERRIPARQA*
AnnotationID:1986GeneID:1977
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:03
Gene Name:
Confidence Code:3
GeneProduct:putative Fe-S-cluster redox enzyme
Cell Localization:()
Synonyms:PA1839
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0820
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAQ00680.1| (AE017165) Predicted Fe-S-cluster redox enzyme [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 348

 Score =  181 bits (458), Expect = 8e-45
 Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 20/336 (5%)








 
Structural Features:
COG0820, COG0820, Predicted Fe-S-cluster redox enzyme
CD-Length = 349 residues, 100.0% aligned
Score =  315 bits (808), Expect = 6e-87
Identities = 129/353 (36%), Positives = 184/353 (52%), Gaps = 19/353 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37076




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1977_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1977
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3440
                           PA1839_tr
                           translation of PA1839
                           346
                           99.42
                           99.42
                           0
                           1755.0
     

     
     
105701
                           gb|AAG05228.1|AE004610_1
                           (AE004610) hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1]
                           346
                           99.42
                           99.42
                           0
                           1755.0
     

     
     
105702
                           gb|AAQ59925.1|
                           (AE016918) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           352
                           68.46
                           78.69
                           6
                           1252.0
     

     






      

          
GC ORFID: 44979How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1839Glimmer Score: 

          
Start: 1317782Stop: 1316742

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1839 translation of PA1839Homolog Bit Score 680.0

          
Other Homologs:  t_PA1839 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGCCAAGACCTCCACCAGCGCCTCGCCGATCTCGGCGCCAAGCCCCTGCATTGCGGGAGGATCGTC 
CGCGCCTGGCTGCAGGGCCGCGCCCTCGATGCCTGCACCGCCCGCCAGCCGGCCGAGGACTTCCTGCCGCTG 
GGCGTACGCCACGGTCTGCCCCAGGTAGCCGCGGAACTGGAAGGCATCGCCCGCCTGCACAGCGAGCATCCG 
GCGAGCGACGGCTCGTCGCGCCTGCTGGTGGAACTGGCCGACCGGCAGATGGTGGAAAGCGTGCTGCTGCCG 
CGCGGTGGGCTGTGCGTCTCGACCCAGGTCGGCTGCGCGGTCGGCTGCGTGTTCTGCATGACCGGCCGCAGC 
GGCCTGCTGCGCCAGGTCGGCAGCCTGGAGATGGTCGCCCAGGTGGTCCTGGCGCGGCGTCGGCGAGCGGTG 
AAGAAAGTGGTGTTCATGGGCATGGGCGAGCCGGCGCACAACCTCGACAACGTCCTCGAAGCCATCGACCTG 
CTCGGCACCGATGGCGGCATCGGCCACAAGAACCTGGTGTTCTCCACCGTCGGCGATCCCCGCGTGTTCGAG 
CGCCTGCCCCTGCAACGGGTGAAGCCCGCCCTCGCCCTGTCCCTGCACAGCACCCGCGCCGAACTGCGCCGG 
CAACTGTTGCCCAAGGCGCCGCCGCTGAGCCCGGAAGAACTGGTGGAAGCCGGCGAGGCCTACGCCCGCCGG 
GTCGACTATCCGATCCAGTACCAATGGACCCTGCTCGAAGGGATCAACGACAGCCTGGAGGAAATGGACGGC 
ATCCTGCGCCTGCTCAAGGGCCGCTTCGCGGTGATGAACCTGATCCCCTACAACAGCATGGACGGCGACGCC 
TACCGGCGCCCGAGCGGGGAGCGGATCGTCGAGCTGGTGCGCTACCTGCACAGCCGCGGCGTGCTGACCAAG 
GTGCGCAACTCGGCCGGCCAGGACATCGACGGCGGCTGCGGGCAACTGCGCGCCAGGGCCACGCAGGGCACG 
GCGGAACGGCGCATCCCCGCCCGCCAGGCCTGA