ViewGene
Locus Name:
GeneID:
Location:

GeneID:1975
TrivialName: PA14_13890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13890
PAO1 Ortholog Locus:PA3868
Sequence Length:1011
Protein Length:336
Start: 1194201
Stop: 1193191
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07255.1|AE004804_3 (AE004804) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 334/336 (99%), Positives = 334/336 (99%)
Sequence:
ATGCTGTTCAGCGTGGTGGATGACCGCAGCGGTGTGGCCTACCAGGAATACCACTGCGTTTATGGTGAGGAT
GCGGAGACGGCACTTCGTTTTCTGTTCAACTCGATGGCGCCGAAAGCGGACCCGAGTTTTCCCTTTCAGGGC
CGGCCCAAGCTGATCTATCTGGACAACGGTCCGGTGGCCAAGCGTCGCGTTTTCCAGAGCGTCATGCGGGCG
CTGGGCATCGAGTGGCAGACACACATCCCTGCCAGCAAGGATGGAACGCGCACCACGGCCCGCTCGAAAGGC
AAGGTCGAACGTCCTTTCCGCACAGTGAAGGAAGCCCACGAGACCCTGTACCACTTCCACAAGCCGGAAACC
GAAGCCCAGGCCAACGAGTGGCTGTTGCGCTACCTAGTGCGCACCTACAACCAGCAGACACATCGTGCCGAA
CCCCTTTCACGGATCGAGGACTGGATCACCCATGTGCCAACAGAGGGGATCCGTGAAATGTGCTCATGGGAT
CAGTTCTGCCGCTTTGCTCGGGAGCCCGAGCGGCGCAAAGTCGGGCCTGATGCCCGAATCACCACCGACGGT
ACCGCGTACGAGCTTGAGCCAGAGATGGCCGGCGACTACGTCGTGCTGCTCTGGGGGCTGTTCGACGATGAG
CTGCATGCCGAGTTCGATGGCGAGCGGTTCGGTCCTCACTACCCGGTGTCCGGCCCCATTCCGCAGCACCGC
TACCGGGCTTTCAAGCGCAGCAAGGCAGACGAGCGCTCGGCTCGTATCCGATCTCTCGCGGACCAGTTGGGG
CTGCCGATCGCGGCGCTTTCCGGGGAAGATGTACGACTAGAGCCCGGTTCTACTGACTCGACGCTCCCCATC
CAGCCCTTCGTTTTCGAGCCCCAGGAATCCCGCATTGCGGCCAAGCCGGCTATCGCCGAGGAACTGGCAATG
CCGCTGGCCAAGCTTTCAATGGATGACCGCGCCTTCATCGACCAGGTGCTGAGCGAGACCCTGGCTACGGAC
TGA
Translation:
MLFSVVDDRSGVAYQEYHCVYGEDAETALRFLFNSMAPKADPSFPFQGRPKLIYLDNGPVAKRRVFQSVMRA
LGIEWQTHIPASKDGTRTTARSKGKVERPFRTVKEAHETLYHFHKPETEAQANEWLLRYLVRTYNQQTHRAE
PLSRIEDWITHVPTEGIREMCSWDQFCRFAREPERRKVGPDARITTDGTAYELEPEMAGDYVVLLWGLFDDE
LHAEFDGERFGPHYPVSGPIPQHRYRAFKRSKADERSARIRSLADQLGLPIAALSGEDVRLEPGSTDSTLPI
QPFVFEPQESRIAAKPAIAEELAMPLAKLSMDDRAFIDQVLSETLATD*
AnnotationID:1984GeneID:1975
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative integrase protein
Cell Localization:()
Synonyms:PA3868
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL23534.1| (AE006471) putative integrase protein [Salmonella typhimurium LT2]
          Length = 554

 Score =  477 bits (1227), Expect = e-134
 Identities = 233/340 (68%), Positives = 277/340 (81%), Gaps = 8/340 (2%)







 
Structural Features:
pfam00665, rve, Integrase core domain.
CD-Length = 160 residues,  76.9% aligned
Score = 60.1 bits (145), Expect = 7e-10
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 19/142 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3953




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31696




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1975_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1975
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3438
                           PA3868_tr
                           translation of PA3868
                           336
                           99.40
                           99.40
                           0
                           1758.0
     

     
     
105659
                           gb|AAG07255.1|AE004804_3
                           (AE004804) hypothetical protein PA3868 [Pseudomonas aeruginosa PAO1]
                           336
                           99.40
                           99.40
                           0
                           1758.0
     

     
     
105660
                           gb|AAF23987.1|
                           (AF043544) unknown [Pseudomonas sp. TW3]
                           553
                           48.64
                           54.43
                           217
                           1423.0
     

     
     
105661
                           gb|AAL23534.1|
                           (AE006471) putative integrase protein [Salmonella typhimurium LT2]
                           555
                           41.98
                           49.90
                           220
                           1232.0
     

     
     
105662
                           dbj|BAB20553.1|
                           (AB040415) orf46 [Salmonella enterica subsp. enterica serovar Choleraesuis]
                           516
                           24.22
                           26.93
                           334
                           607.0
     

     






      

          
GC ORFID: 44977How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3868Glimmer Score: 

          
Start: 3759737Stop: 3760747

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3868 translation of PA3868Homolog Bit Score 681.0

          
Other Homologs:  t_PA3868 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTTCAGCGTGGTGGATGACCGCAGCGGTGTGGCCTACCAGGAATACCACTGCGTTTATGGTGAGGAT 
GCGGAGACGGCACTTCGTTTTCTGTTCAACTCGATGGCGCCGAAAGCGGACCCGAGTTTTCCCTTTCAGGGC 
CGGCCCAAGCTGATCTATCTGGACAACGGTCCGGTGGCCAAGCGTCGCGTTTTCCAGAGCGTCATGCGGGCG 
CTGGGCATCGAGTGGCAGACACACATCCCTGCCAGCAAGGATGGAACGCGCACCACGGCCCGCTCGAAAGGC 
AAGGTCGAACGTCCTTTCCGCACAGTGAAGGAAGCCCACGAGACCCTGTACCACTTCCACAAGCCGGAAACC 
GAAGCCCAGGCCAACGAGTGGCTGTTGCGCTACCTAGTGCGCACCTACAACCAGCAGACACATCGTGCCGAA 
CCCCTTTCACGGATCGAGGACTGGATCACCCATGTGCCAACAGAGGGGATCCGTGAAATGTGCTCATGGGAT 
CAGTTCTGCCGCTTTGCTCGGGAGCCCGAGCGGCGCAAAGTCGGGCCTGATGCCCGAATCACCACCGACGGT 
ACCGCGTACGAGCTTGAGCCAGAGATGGCCGGCGACTACGTCGTGCTGCTCTGGGGGCTGTTCGACGATGAG 
CTGCATGCCGAGTTCGATGGCGAGCGGTTCGGTCCTCACTACCCGGTGTCCGGCCCCATTCCGCAGCACCGC 
TACCGGGCTTTCAAGCGCAGCAAGGCAGACGAGCGCTCGGCTCGTATCCGATCTCTCGCGGACCAGTTGGGG 
CTGCCGATCGCGGCGCTTTCCGGGGAAGATGTACGACTAGAGCCCGGTTCTACTGACTCGACGCTCCCCATC 
CAGCCCTTCGTTTTCGAGCCCCAGGAATCCCGCATTGCGGCCAAGCCGGCTATCGCCGAGGAACTGGCAATG 
CCGCTGGCCAAGCTTTCAATGGATGACCGCGCCTTCATCGACCAGGTGCTGAGCGAGACCCTGGCTACGGAC 
TGA