ViewGene
Locus Name:
GeneID:
Location:

GeneID:1974
TrivialName: PA14_24210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24210
PAO1 Ortholog Locus:PA3089
Sequence Length:966
Protein Length:321
Start: 2101205
Stop: 2100240
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06477.1|AE004733_4 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 320/321 (99%), Positives = 320/321 (99%)
Sequence:
ATGACGCTGCTGACCGAACTGCTCGACGAATTGCGCCACCCGGCCGTCCGCGACCTGGCCTGGACCCTGCTC
GCCCCGCCGTTGCTGCGCCGGACCCCGGAGCCGCAGCGCCATCCGCTCGCCGCCAGCCGCTGGCGCCAGGAG
CCGGAGCGCCTGGCCGCCTGGTTGCGCGAACAGGAGCGACAGCCGCAGCACCTCGCCGCCTGGCTCGCGCAG
TGGCCACGGCAGCGTCTCGGCCTGTACTACGAACATCTCTGGCAATTCGCCCTGGAACAAGCCCCGGACGTG
CGCCTGATCGCCGCCAACCTGCCGGTGCGCGACGGCGGGCATACCCTTGGCGAACTCGACCTGCTGCTGCGG
GACGACGACGGCATCCACCACCTGGAACTGGCGATCAAACTCTACCTGGGGCCCCAGTCCGGCCCCGGCGAC
TGGCTCGGGCCCGGCGGCCAGGACCGCCTGTCACGCAAGCTGGAACACCTCTGCCGACACCAGTTGCCGCTG
GCGGCGACCCGCGAGGGTCGCCAGGTGCTGGCCGCCCATGGAGCCGAATCGGCCGTTTCCGCATTGTGGCTG
AGCGGCTACCTGTTCCATCCCTGGCCCGGGCCGGGCAGCCTGCCCGCCGACATCGAGCCACGGCATCTGCGT
GGCCGCTGGCTCCGCCAGCGCGACTGGCCGGCGTACCTGGCCAGCCTGGCCGGACCGCAGGCCGGGCAGCAT
TGGCTGCATCTGTCGCGCGAGCACTGGCTGGCGCCGGCCATGCGGCGGCAGGACCCGCTCGACCCACCGCGC
GACGGCGCCTGCTGGAACATCGCCTTCGCCGACGAGGCACGTCCGCAAATGCTGGTAAGGGTGGTGCCGCGC
GACGGCTACTGGGTAGAGGCCGAGCGCCTGTTCCTGGCCAGCGACGACTGGCCCCCGGGGCTCAGCCTGTGG
GGTAGCGCGCGCCAGGCCGCGGATGCCTGA
Translation:
MTLLTELLDELRHPAVRDLAWTLLAPPLLRRTPEPQRHPLAASRWRQEPERLAAWLREQERQPQHLAAWLAQ
WPRQRLGLYYEHLWQFALEQAPDVRLIAANLPVRDGGHTLGELDLLLRDDDGIHHLELAIKLYLGPQSGPGD
WLGPGGQDRLSRKLEHLCRHQLPLAATREGRQVLAAHGAESAVSALWLSGYLFHPWPGPGSLPADIEPRHLR
GRWLRQRDWPAYLASLAGPQAGQHWLHLSREHWLAPAMRRQDPLDPPRDGACWNIAFADEARPQMLVRVVPR
DGYWVEAERLFLASDDWPPGLSLWGSARQAADA*
AnnotationID:1983GeneID:1974
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:42
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA3089
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3782
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1974
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3437
                           PA3089_tr
                           translation of PA3089
                           321
                           99.68
                           99.68
                           0
                           1758.0
     

     
     
105656
                           gb|AAG06477.1|AE004733_4
                           (AE004733) hypothetical protein PA3089 [Pseudomonas aeruginosa PAO1]
                           321
                           99.68
                           99.68
                           0
                           1758.0
     

     
     
105658
                           gb|AAO57266.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           358
                           48.32
                           56.70
                           68
                           830.0
     

     
     
105657
                           gb|AAN67625.1|AE016392_6
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           377
                           45.35
                           53.05
                           84
                           840.0
     

     






      

          
GC ORFID: 44976How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3089Glimmer Score: 

          
Start: 2852726Stop: 2853691

          
Length: 966


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3089 translation of PA3089Homolog Bit Score 681.0

          
Other Homologs:  t_PA3089 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCTGCTGACCGAACTGCTCGACGAATTGCGCCACCCGGCCGTCCGCGACCTGGCCTGGACCCTGCTC 
GCCCCGCCGTTGCTGCGCCGGACCCCGGAGCCGCAGCGCCATCCGCTCGCCGCCAGCCGCTGGCGCCAGGAG 
CCGGAGCGCCTGGCCGCCTGGTTGCGCGAACAGGAGCGACAGCCGCAGCACCTCGCCGCCTGGCTCGCGCAG 
TGGCCACGGCAGCGTCTCGGCCTGTACTACGAACATCTCTGGCAATTCGCCCTGGAACAAGCCCCGGACGTG 
CGCCTGATCGCCGCCAACCTGCCGGTGCGCGACGGCGGGCATACCCTTGGCGAACTCGACCTGCTGCTGCGG 
GACGACGACGGCATCCACCACCTGGAACTGGCGATCAAACTCTACCTGGGGCCCCAGTCCGGCCCCGGCGAC 
TGGCTCGGGCCCGGCGGCCAGGACCGCCTGTCACGCAAGCTGGAACACCTCTGCCGACACCAGTTGCCGCTG 
GCGGCGACCCGCGAGGGTCGCCAGGTGCTGGCCGCCCATGGAGCCGAATCGGCCGTTTCCGCATTGTGGCTG 
AGCGGCTACCTGTTCCATCCCTGGCCCGGGCCGGGCAGCCTGCCCGCCGACATCGAGCCACGGCATCTGCGT 
GGCCGCTGGCTCCGCCAGCGCGACTGGCCGGCGTACCTGGCCAGCCTGGCCGGACCGCAGGCCGGGCAGCAT 
TGGCTGCATCTGTCGCGCGAGCACTGGCTGGCGCCGGCCATGCGGCGGCAGGACCCGCTCGACCCACCGCGC 
GACGGCGCCTGCTGGAACATCGCCTTCGCCGACGAGGCACGTCCGCAAATGCTGGTAAGGGTGGTGCCGCGC 
GACGGCTACTGGGTAGAGGCCGAGCGCCTGTTCCTGGCCAGCGACGACTGGCCCCCGGGGCTCAGCCTGTGG 
GGTAGCGCGCGCCAGGCCGCGGATGCCTGA