ViewGene
Locus Name:
GeneID:
Location:

GeneID:1973
TrivialName: PA14_24140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24140
PAO1 Ortholog Locus:PA3094
Sequence Length:1038
Protein Length:345
Start: 2094157
Stop: 2093120
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06482.1|AE004733_9 (AE004733) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 342/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGAGCGCGCCCCGGGTTCGCCTCGGCGACCTCTCGGTCGGCTTCGTCCAGGCGCTGGCCGACGCCCTGCTC
GCCGCCGGCGTCGAGCCCGCAGCACTGCTCGAGCAGTACGGCCTCGACCAGCGGCGCCTGGCCGAACCCGGG
GCGCGCCTGTCGATCCCTCGCTACATGCGCCTCGGCCATGCCGCCATACAGCTCAGCGGCGACCCCGCCCTC
GGCCTGCAGATGGGCCGCCTGAGCCGTCTCGGACAGATGGGCCTGGCCGGCGTCAGCGTCGCCCAGGCGCCC
AACCTGCGCGCCGCCGCGCGGGCAATGATCCACCTGGAACCGCTTTACGCGCAGAACTACCGGGGCCAGTCG
AGCCTGGTGGAAGACGCCGGCGGCGCCTGGCTGCGCTTCTATTCGATCAGCCCTTATAACGCCTATAACCGC
TTCGTCGTCGATTCGGTGCTGGCAGGCTGGATCAGCCATCTCGGCGCCCTGGCAAGGCAGCCGTTGAAAGCG
GAGCGGGTGGAGATCGAATATCCAGCGCCGCCTTGGGCCGAGCGCTACGAGGCATTCTTCGGCTGCCCGGTG
GAATTCGGCGCGCCGACCAACCAGTTGCGCCTGAGCCAGGCCAGCCTGGCCCTGGCGAATGCCGAGCACTGT
CCGAGCACCTGGAGCCAGATGCTGGAACTCTGCAACCGCGAACTGGAGCAGTTGACCCGCACCCGCAGTTGG
CGCGAGCGCGTCAGCCGCCTGCTGGGGCCGATGCTCAATGGTCGCGAACCGGACCTCGAGGAAATCGCCGCG
CGCCTCAAGTTGCCGACCTGGACCCTGCGGCGCAAGCTGGCCGAGGAAGGCACCCAGTTCCGCAGCATCCTC
AACGACACCCGCCGCGACCTGGCGATGGTCTACATCCGCGAGACCGACCTGGCTTTCGGCGAAATCGCCTAC
CTGCTCGGCTTCGCCTCGGCGGAAGCCTTCCAGCGCGCCTTCAAGCGCTGGAGCGGGCAGACGCCCGGCGAA
TTCCGCCGCGCCCAGCGACAGAGCGCCTGA
Translation:
MSAPRVRLGDLSVGFVQALADALLAAGVEPAALLEQYGLDQRRLAEPGARLSIPRYMRLGHAAIQLSGDPAL
GLQMGRLSRLGQMGLAGVSVAQAPNLRAAARAMIHLEPLYAQNYRGQSSLVEDAGGAWLRFYSISPYNAYNR
FVVDSVLAGWISHLGALARQPLKAERVEIEYPAPPWAERYEAFFGCPVEFGAPTNQLRLSQASLALANAEHC
PSTWSQMLELCNRELEQLTRTRSWRERVSRLLGPMLNGREPDLEEIAARLKLPTWTLRRKLAEEGTQFRSIL
NDTRRDLAMVYIRETDLAFGEIAYLLGFASAEAFQRAFKRWSGQTPGEFRRAQRQSA*
AnnotationID:1982GeneID:1973
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 18:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3094
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57274.1| (AE016869) transcriptional regulator, AraC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 346

 Score =  498 bits (1282), Expect = e-140
 Identities = 246/341 (72%), Positives = 284/341 (83%), Gaps = 1/341 (0%)

>gb|AAN67618.1|AE016391_9 (AE016781) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 346

 Score =  469 bits (1207), Expect = e-131






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 76.4 bits (188), Expect = 4e-15
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3949




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32430




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1973_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1973
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3436
                           PA3094_tr
                           translation of PA3094
                           345
                           99.13
                           99.71
                           0
                           1758.0
     

     
     
105652
                           gb|AAG06482.1|AE004733_9
                           (AE004733) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           345
                           99.13
                           99.71
                           0
                           1758.0
     

     
     
105654
                           gb|AAC83365.1|
                           (AF092918) virulence regulating homolog [Pseudomonas alcaligenes]
                           346
                           71.96
                           80.63
                           1
                           1266.0
     

     
     
105653
                           gb|AAO57274.1|
                           (AE016869) transcriptional regulator, AraC family [Pseudomonas syringae pv. tomato str. DC3000]
                           346
                           71.38
                           82.36
                           1
                           1284.0
     

     
     
105655
                           gb|AAN67618.1|AE016391_9
                           (AE016781) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           346
                           67.91
                           80.05
                           1
                           1209.0
     

     






      

          
GC ORFID: 44975How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3094Glimmer Score: 

          
Start: 2859774Stop: 2860811

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3094 translation of PA3094Homolog Bit Score 681.0

          
Other Homologs:  t_PA3094 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGCCCCGGGTTCGCCTCGGCGACCTCTCGGTCGGCTTCGTCCAGGCGCTGGCCGACGCCCTGCTC 
GCCGCCGGCGTCGAGCCCGCAGCACTGCTCGAGCAGTACGGCCTCGACCAGCGGCGCCTGGCCGAACCCGGG 
GCGCGCCTGTCGATCCCTCGCTACATGCGCCTCGGCCATGCCGCCATACAGCTCAGCGGCGACCCCGCCCTC 
GGCCTGCAGATGGGCCGCCTGAGCCGTCTCGGACAGATGGGCCTGGCCGGCGTCAGCGTCGCCCAGGCGCCC 
AACCTGCGCGCCGCCGCGCGGGCAATGATCCACCTGGAACCGCTTTACGCGCAGAACTACCGGGGCCAGTCG 
AGCCTGGTGGAAGACGCCGGCGGCGCCTGGCTGCGCTTCTATTCGATCAGCCCTTATAACGCCTATAACCGC 
TTCGTCGTCGATTCGGTGCTGGCAGGCTGGATCAGCCATCTCGGCGCCCTGGCAAGGCAGCCGTTGAAAGCG 
GAGCGGGTGGAGATCGAATATCCAGCGCCGCCTTGGGCCGAGCGCTACGAGGCATTCTTCGGCTGCCCGGTG 
GAATTCGGCGCGCCGACCAACCAGTTGCGCCTGAGCCAGGCCAGCCTGGCCCTGGCGAATGCCGAGCACTGT 
CCGAGCACCTGGAGCCAGATGCTGGAACTCTGCAACCGCGAACTGGAGCAGTTGACCCGCACCCGCAGTTGG 
CGCGAGCGCGTCAGCCGCCTGCTGGGGCCGATGCTCAATGGTCGCGAACCGGACCTCGAGGAAATCGCCGCG 
CGCCTCAAGTTGCCGACCTGGACCCTGCGGCGCAAGCTGGCCGAGGAAGGCACCCAGTTCCGCAGCATCCTC 
AACGACACCCGCCGCGACCTGGCGATGGTCTACATCCGCGAGACCGACCTGGCTTTCGGCGAAATCGCCTAC 
CTGCTCGGCTTCGCCTCGGCGGAAGCCTTCCAGCGCGCCTTCAAGCGCTGGAGCGGGCAGACGCCCGGCGAA 
TTCCGCCGCGCCCAGCGACAGAGCGCCTGA