ViewGene
Locus Name:
GeneID:
Location:

GeneID:1972
TrivialName: PA14_43280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43280
PAO1 Ortholog Locus:PA1642
Sequence Length:1035
Protein Length:344
Start: 3856250
Stop: 3855216
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05031.1|AE004592_2 (AE004592) selenophosphate synthetase [Pseudomonas aeruginosa PAO1]
Identities = 344/344 (100%), Positives = 344/344 (100%)
Sequence:
ATGAGCGAGGCGATCCGCCTGACCCAGTACAGCCACGGCGCCGGCTGCGGCTGCAAGATTTCGCCCAAGGTA
CTGGAGGTGATCCTCGCCGGCAGCGGCGCGCAGAACCTCGATCCGAAGCTCTGGGTCGGCAACGCCTCGCGC
GACGACGCGGCTGTCTACGCCCTCGACGAGGAGCGCGGGGTGGTCTCCACCACCGATTTCTTCATGCCGATC
GTCGACGACCCCTTCGATTTCGGCCGTATCGCCGCGACCAACGCCATCAGCGACATCTACGCCATGGGTGGC
GACCCGCTGATGGCCATCGCCATCCTCGGCTGGCCGGTCAACGTGCTGGCCGCGGAAGTCGCCCGCGAGGTG
ATCGCCGGCGGCCGCAAGGTCTGCGAGGAAGCCGGCATCCCGCTGGCCGGCGGACACTCCATCGACGCCCCC
GAGCCGATCTTCGGCCTGGCCGTGACCGGCGTGGTGGAGAAGCGTTTCATGAAACGCAACGACACCGCCGAG
GCCGGCTGCAGGCTGTACCTGACCAAGCCGCTGGGCATCGGCATCCTCACCACTGCCGAGAAGAAGGCCAGG
CTGCGCGCCGAGGACGTCGGCGTGGCGCGCGACTGGATGTGCACCCTGAACAGGCCCGGCGCGCGCTTCGGT
CGATTGGCCGGGGTCAAGGCGATGACCGACGTCACCGGTTTCGGCCTGCTCGGCCACCTGGTGGAAATGGCC
GACGGCAGCAAGCTCACCGCGCGCGTTGAGTACGCCGCGGTGCCGCGCCTGGCCAGTGCCGAATATTACCTG
GAGCAGGGCTGCGTGCCCGGCGGCACCCTGCGCAACTTCGACAGCTATGGCGAGCGCATCGCGCCACTGCCG
GAGGTGCAGAAGCTGTTGCTTTGCGATCCGCAGACCAGCGGCGGCCTGCTGGTGGCGGTGGCTCCGGAAGGC
GAGGCGGAGTTCCTCGCCGTGGCGGCGGAACTCGGCCTGCAACTGGCGCCGATCGGCGAACTGGTCGAGCGA
CAGAGTCTCGCGGTACAGGTGCTGTAA
Translation:
MSEAIRLTQYSHGAGCGCKISPKVLEVILAGSGAQNLDPKLWVGNASRDDAAVYALDEERGVVSTTDFFMPI
VDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAAEVAREVIAGGRKVCEEAGIPLAGGHSIDAP
EPIFGLAVTGVVEKRFMKRNDTAEAGCRLYLTKPLGIGILTTAEKKARLRAEDVGVARDWMCTLNRPGARFG
RLAGVKAMTDVTGFGLLGHLVEMADGSKLTARVEYAAVPRLASAEYYLEQGCVPGGTLRNFDSYGERIAPLP
EVQKLLLCDPQTSGGLLVAVAPEGEAEFLAVAAELGLQLAPIGELVERQSLAVQVL*
AnnotationID:1981GeneID:1972
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:22
Gene Name:selD
Confidence Code:2
GeneProduct:selenophosphate synthetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:selenide, water dikinase
Functional Category Confidence Code:5
COGs:COG0709
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:2.7.9.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54335.1| (AE016858) selenide, water dikinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 344

 Score =  594 bits (1531), Expect = e-169
 Identities = 293/343 (85%), Positives = 319/343 (93%)

>gb|AAN66448.1|AE016274_5 (AE016777) selenide, water dikinase [Pseudomonas putida KT2440]
          Length = 344

 Score =  586 bits (1510), Expect = e-167
 Identities = 290/344 (84%), Positives = 316/344 (91%)

>emb|CAC90972.1| (AJ414151) selenide, water dikinase [Yersinia pestis CO92]
          Length = 348

 Score =  453 bits (1165), Expect = e-127
 Identities = 222/337 (65%), Positives = 268/337 (79%)






 
Structural Features:
COG0709, SelD, Selenophosphate synthase [Amino acid transport and metabolism]
CD-Length = 346 residues,  99.7% aligned
Score =  492 bits (1269), Expect = 2e-140
Identities = 229/345 (66%), Positives = 267/345 (77%), Gaps = 1/345 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3947




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21093




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37251




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1972_cdd.html


    		




 
URL:

















    ReferenceID:37881




  
Author/Investigator(s):
        Sawers G, Heider J, Zehelein E, Bock A.





  
Title:
        Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme.




  
PubMed:
        1650339


MedLine:
        




    
Source:
J Bacteriol. 1991 Aug;173(16):4983-93.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1650339

















    ReferenceID:37882




  
Author/Investigator(s):
        Leinfelder W, Forchhammer K, Veprek B, Zehelein E, Bock A.





  
Title:
        In vitro synthesis of selenocysteinyl-tRNA(UCA) from seryl-tRNA(UCA): involvement and characterization of the selD gene product.




  
PubMed:
        2405383


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1990 Jan;87(2):543-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2405383









           
Homologs By Global Alignment 

           

       



     
Gene ID:1972
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3435
                           PA1642_tr
                           translation of PA1642
                           344
                           99.99
                           99.99
                           0
                           1756.0
     

     
     
105621
                           gb|AAG05031.1|AE004592_2
                           (AE004592) selenophosphate synthetase [Pseudomonas aeruginosa PAO1]
                           344
                           99.99
                           99.99
                           0
                           1756.0
     

     
     
105622
                           gb|AAO54335.1|
                           (AE016858) selenide, water dikinase [Pseudomonas syringae pv. tomato str. DC3000]
                           344
                           85.17
                           92.73
                           0
                           1531.0
     

     
     
105623
                           gb|AAN66448.1|AE016274_5
                           (AE016777) selenide, water dikinase [Pseudomonas putida KT2440]
                           344
                           84.30
                           91.86
                           0
                           1510.0
     

     
     
105624
                           emb|CAE35101.1|
                           (BX640451) selenide,water dikinase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           344
                           82.84
                           90.40
                           0
                           1490.0
     

     






      

          
GC ORFID: 44974How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1642Glimmer Score: 

          
Start: 1097659Stop: 1098693

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1642 translation of PA1642Homolog Bit Score 681.0

          
Other Homologs:  t_PA1642 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGGCGATCCGCCTGACCCAGTACAGCCACGGCGCCGGCTGCGGCTGCAAGATTTCGCCCAAGGTA 
CTGGAGGTGATCCTCGCCGGCAGCGGCGCGCAGAACCTCGATCCGAAGCTCTGGGTCGGCAACGCCTCGCGC 
GACGACGCGGCTGTCTACGCCCTCGACGAGGAGCGCGGGGTGGTCTCCACCACCGATTTCTTCATGCCGATC 
GTCGACGACCCCTTCGATTTCGGCCGTATCGCCGCGACCAACGCCATCAGCGACATCTACGCCATGGGTGGC 
GACCCGCTGATGGCCATCGCCATCCTCGGCTGGCCGGTCAACGTGCTGGCCGCGGAAGTCGCCCGCGAGGTG 
ATCGCCGGCGGCCGCAAGGTCTGCGAGGAAGCCGGCATCCCGCTGGCCGGCGGACACTCCATCGACGCCCCC 
GAGCCGATCTTCGGCCTGGCCGTGACCGGCGTGGTGGAGAAGCGTTTCATGAAACGCAACGACACCGCCGAG 
GCCGGCTGCAGGCTGTACCTGACCAAGCCGCTGGGCATCGGCATCCTCACCACTGCCGAGAAGAAGGCCAGG 
CTGCGCGCCGAGGACGTCGGCGTGGCGCGCGACTGGATGTGCACCCTGAACAGGCCCGGCGCGCGCTTCGGT 
CGATTGGCCGGGGTCAAGGCGATGACCGACGTCACCGGTTTCGGCCTGCTCGGCCACCTGGTGGAAATGGCC 
GACGGCAGCAAGCTCACCGCGCGCGTTGAGTACGCCGCGGTGCCGCGCCTGGCCAGTGCCGAATATTACCTG 
GAGCAGGGCTGCGTGCCCGGCGGCACCCTGCGCAACTTCGACAGCTATGGCGAGCGCATCGCGCCACTGCCG 
GAGGTGCAGAAGCTGTTGCTTTGCGATCCGCAGACCAGCGGCGGCCTGCTGGTGGCGGTGGCTCCGGAAGGC 
GAGGCGGAGTTCCTCGCCGTGGCGGCGGAACTCGGCCTGCAACTGGCGCCGATCGGCGAACTGGTCGAGCGA 
CAGAGTCTCGCGGTACAGGTGCTGTAA