ViewGene
Locus Name:
GeneID:
Location:

GeneID:197
TrivialName: PA14_55450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55450
PAO1 Ortholog Locus:PA0685
Sequence Length:2412
Protein Length:803
Start: 4937355
Stop: 4934944
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04074.1|AE004503_12 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 800/803 (99%), Positives = 800/803 (99%)
Sequence:
ATGAGGCAATCAGCTTTCCACCATGCCCGGCGTCGTTGGCCTGTACTGGGCGTGGCGCTGGGCGCGCTACTG
GTCGCGGCGTGTAGCGAGACGCCGAAGGTCCCCGGCGTGCCCCCGGCCGACGAGGAAGTCGGTCGGCCGCTG
AGCAGTGTCCGCTCCGGTGCGCCGTTGCGCAGCGCCGACGTCCGCGAGCGGCCCCAGGCCGAGCAGGCCCGC
CGCGCGCTGAGTGCCGGGCGCGGCGTAGCGCGCTCCGGTGCCGTGGCTCCGGTCTCAGCGGCAGCGGCCGAA
CTCGGCGAGCAGCCGGTCAGCCTGAATTTCGTCGATACCGAGGTGGAAGCGGTGGTGCGCGCGCTGTCGCGC
GCCACCGGCCGGCAGTTCCTGGTCGACCCGCGGGTGAAGGGCAAGCTGACCCTGGTTTCCGAAGGCCAGGTG
CCGGCGCGCACCGCCTACCGCATGCTCACCAGCGCCCTGCGCATGCAGGGCTTCAGCGTGGTCGACGTCGAC
GGGGTCAGCCAGGTGGTGCCGGAGGCCGACGCCAAGCTGCTCGGCGGGCCGGTCTACGGCGCCGACCGGCCG
GCGGCCAACGGCATGGTCACGCGGACCTTCCGCCTGCGTTACGAGAACGCGGTGAACCTGATCCCGGTGCTG
CGCCCGATCGTCGCGCAGAACAACCCGATCAATGCCTATCCGGGGAACAACACCGTGGTGGTCACCGACTAC
GCGGAAAACCTCGATCGGGTCGCCGGGATCATCGCCAGCATCGACATCCCCAGCGCCAGCGACACCGACGTG
GTGCCGATCCAGAACGGTATCGCGGTGGACATCGCCAGCACCGTCTCCGAACTGCTCGACAGCCAGGGCAGC
GGCGGCGCCGAGCAGGGCCAGAAGACCGTGGTGCTCGCCGACCCACGCTCCAACAGCATCGTGATCCGCTCG
CCGAGCCCGGAGCGCACGCAATTGGCGCGCGACCTGATCGGCAAGCTGGACAGCGTGCAAAGCAATCCCGGC
AACCTCCATGTGGTCTACTTGCGCAACGCCCAGGCGACCCGCCTGGCCCAGGCCCTGCGCGGGCTGATCACC
GGCGACAGCGGCGGCGAGGGCAACGAGGGCGACCAGCAGCGCGCGCGCCTGAGCGGCGGCGGCATGCTCGGT
GGCGGCAACAGCGGTACTGGTAGCCAGGCCCTGGGGAGCAGCGGCAATACCACGGGCAGCGGTTCCAGCGGG
TTGGGCGGCAGCAACCGCAGCGGCGGCGCCTATGGTGCGATGGGCAGCGGCCAGGGCGGCGCCGGACCCGGT
GCGATGGGCGAGGAGAACTCGGCGTTCTCCGCCGGCGGGGTCACCGTACAGGCCGACGCCACCACCAACACC
CTGCTGATTTCCGCACCCGAGCCGTTGTACCGCAACCTCCGCGAAGTCATCGACCTGCTCGACCAGCGCCGC
GCCCAGGTGGTGATCGAAAGCCTGATCGTCGAGGTCAGCGAAGACGACTCCAGCGAGTTCGGCATCCAGTGG
CAGGCCGGCAACCTCGGCGGCAACGGCGTGTTCGGCGGGGTCAACTTCGGCCAGTCGGCGCTGAACACGGCC
GGCAAGAACACCATCGACGTGTTGCCCAAGGGGCTCAACATCGGCCTGGTGGATGGCACCGTGGACATCCCC
GGGATCGGCAAGATCCTCGACCTCAAGGTGCTCGCCCGGGCGCTGAAGAGCCGCGGCGGCACCAACGTCCTG
TCGACCCCGAACCTGCTGACCCTGGACAACGAGTCGGCGAGCATCATGGTCGGCCAGACCATACCCTTCGTC
AGCGGCCAGTACGTCACCGACGGCGGCGGTACCAGCAACAACCCGTTCCAGACCATCCAGCGCGAGGACGTC
GGCCTGAAGCTGAACATCCGTCCGCAGATCTCCGAGGGCGGCACGGTCAAGCTCGACGTCTACCAGGAGGTC
AGCAGCGTCGACGAGCGCGCCAGCACCGCCGCCGGGGTGGTCACCAACAAGCGCGCGATCGATACCAGCATC
CTCCTCGACGACGGCCAGATCATGGTCCTCGGCGGCCTGTTGCAGGACAACGTGCAGGACAACACCGACGGC
GTTCCCGGACTCTCCAGCCTCCCCGGCGTCGGCTCGCTGTTCCGCTACCAGAAGCGCTCGCGGACCAAGACC
AACCTGATGGTCTTCCTGCGTCCCTACATCGTCCGCGACGCCGCCGCCGGGCGCAGCATCACCCTCAACCGC
TACGACTTCATCCGCCGCGCCCAGCAGCGCGTGCAGCCGCGCCACGACTGGAGCGTCGGCGACATGCAGGCT
CCGGTGCTGCCGCCGGCGCAGCAGGGCATCCCGCAGGCCGCCTACGACTTACGCCCGAGCCCGCGGCCGCTG
CGCGCGGTACCGCTGGGCGAGGCGGCGCCGCTATGA
Translation:
MRQSAFHHARRRWPVLGVALGALLVAACSETPKVPGVPPADEEVGRPLSSVRSGAPLRSADVRERPQAEQAR
RALSAGRGVARSGAVAPVSAAAAELGEQPVSLNFVDTEVEAVVRALSRATGRQFLVDPRVKGKLTLVSEGQV
PARTAYRMLTSALRMQGFSVVDVDGVSQVVPEADAKLLGGPVYGADRPAANGMVTRTFRLRYENAVNLIPVL
RPIVAQNNPINAYPGNNTVVVTDYAENLDRVAGIIASIDIPSASDTDVVPIQNGIAVDIASTVSELLDSQGS
GGAEQGQKTVVLADPRSNSIVIRSPSPERTQLARDLIGKLDSVQSNPGNLHVVYLRNAQATRLAQALRGLIT
GDSGGEGNEGDQQRARLSGGGMLGGGNSGTGSQALGSSGNTTGSGSSGLGGSNRSGGAYGAMGSGQGGAGPG
AMGEENSAFSAGGVTVQADATTNTLLISAPEPLYRNLREVIDLLDQRRAQVVIESLIVEVSEDDSSEFGIQW
QAGNLGGNGVFGGVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVL
STPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEV
SSVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKT
NLMVFLRPYIVRDAAAGRSITLNRYDFIRRAQQRVQPRHDWSVGDMQAPVLPPAQQGIPQAAYDLRPSPRPL
RAVPLGEAAPL*
AnnotationID:207GeneID:197
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 15:03:53
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:(6) Outer membrane protein
Synonyms:PA0685, hxcQ
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1450, PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion]






   
Genomic Context:






   
Comment:


















    ReferenceID:397




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:197
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
338
                           PA0685_tr
                           translation of PA0685
                           803
                           99.62
                           99.62
                           0
                           4017.0
     

     
     
21429
                           gb|AAG04074.1|AE004503_12
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           803
                           99.62
                           99.62
                           0
                           4017.0
     

     
     
21430
                           emb|CAD16823.1|
                           (AL646073) PROBABLE GENERAL SECRETORY PATHWAY D TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           888
                           38.40
                           53.04
                           168
                           1486.0
     

     
     
21431
                           gb|AAD05173.1|
                           (AF110185) general secretory pathway protein D [Burkholderia pseudomallei]
                           855
                           38.01
                           52.63
                           157
                           1405.0
     

     
     
21432
                           dbj|BAB18788.1|
                           (AB050004) GspD [Burkholderia cepacia]
                           885
                           36.15
                           51.86
                           184
                           1398.0
     

     






      

          
GC ORFID: 43199How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0685Glimmer Score: 

          
Start: 16552Stop: 18963

          
Length: 2412


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0685 translation of PA0685Homolog Bit Score 1551.0

          
Other Homologs:  t_PA0685 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGCAATCAGCTTTCCACCATGCCCGGCGTCGTTGGCCTGTACTGGGCGTGGCGCTGGGCGCGCTACTG 
GTCGCGGCGTGTAGCGAGACGCCGAAGGTCCCCGGCGTGCCCCCGGCCGACGAGGAAGTCGGTCGGCCGCTG 
AGCAGTGTCCGCTCCGGTGCGCCGTTGCGCAGCGCCGACGTCCGCGAGCGGCCCCAGGCCGAGCAGGCCCGC 
CGCGCGCTGAGTGCCGGGCGCGGCGTAGCGCGCTCCGGTGCCGTGGCTCCGGTCTCAGCGGCAGCGGCCGAA 
CTCGGCGAGCAGCCGGTCAGCCTGAATTTCGTCGATACCGAGGTGGAAGCGGTGGTGCGCGCGCTGTCGCGC 
GCCACCGGCCGGCAGTTCCTGGTCGACCCGCGGGTGAAGGGCAAGCTGACCCTGGTTTCCGAAGGCCAGGTG 
CCGGCGCGCACCGCCTACCGCATGCTCACCAGCGCCCTGCGCATGCAGGGCTTCAGCGTGGTCGACGTCGAC 
GGGGTCAGCCAGGTGGTGCCGGAGGCCGACGCCAAGCTGCTCGGCGGGCCGGTCTACGGCGCCGACCGGCCG 
GCGGCCAACGGCATGGTCACGCGGACCTTCCGCCTGCGTTACGAGAACGCGGTGAACCTGATCCCGGTGCTG 
CGCCCGATCGTCGCGCAGAACAACCCGATCAATGCCTATCCGGGGAACAACACCGTGGTGGTCACCGACTAC 
GCGGAAAACCTCGATCGGGTCGCCGGGATCATCGCCAGCATCGACATCCCCAGCGCCAGCGACACCGACGTG 
GTGCCGATCCAGAACGGTATCGCGGTGGACATCGCCAGCACCGTCTCCGAACTGCTCGACAGCCAGGGCAGC 
GGCGGCGCCGAGCAGGGCCAGAAGACCGTGGTGCTCGCCGACCCACGCTCCAACAGCATCGTGATCCGCTCG 
CCGAGCCCGGAGCGCACGCAATTGGCGCGCGACCTGATCGGCAAGCTGGACAGCGTGCAAAGCAATCCCGGC 
AACCTCCATGTGGTCTACTTGCGCAACGCCCAGGCGACCCGCCTGGCCCAGGCCCTGCGCGGGCTGATCACC 
GGCGACAGCGGCGGCGAGGGCAACGAGGGCGACCAGCAGCGCGCGCGCCTGAGCGGCGGCGGCATGCTCGGT 
GGCGGCAACAGCGGTACTGGTAGCCAGGCCCTGGGGAGCAGCGGCAATACCACGGGCAGCGGTTCCAGCGGG 
TTGGGCGGCAGCAACCGCAGCGGCGGCGCCTATGGTGCGATGGGCAGCGGCCAGGGCGGCGCCGGACCCGGT 
GCGATGGGCGAGGAGAACTCGGCGTTCTCCGCCGGCGGGGTCACCGTACAGGCCGACGCCACCACCAACACC 
CTGCTGATTTCCGCACCCGAGCCGTTGTACCGCAACCTCCGCGAAGTCATCGACCTGCTCGACCAGCGCCGC 
GCCCAGGTGGTGATCGAAAGCCTGATCGTCGAGGTCAGCGAAGACGACTCCAGCGAGTTCGGCATCCAGTGG 
CAGGCCGGCAACCTCGGCGGCAACGGCGTGTTCGGCGGGGTCAACTTCGGCCAGTCGGCGCTGAACACGGCC 
GGCAAGAACACCATCGACGTGTTGCCCAAGGGGCTCAACATCGGCCTGGTGGATGGCACCGTGGACATCCCC 
GGGATCGGCAAGATCCTCGACCTCAAGGTGCTCGCCCGGGCGCTGAAGAGCCGCGGCGGCACCAACGTCCTG 
TCGACCCCGAACCTGCTGACCCTGGACAACGAGTCGGCGAGCATCATGGTCGGCCAGACCATACCCTTCGTC 
AGCGGCCAGTACGTCACCGACGGCGGCGGTACCAGCAACAACCCGTTCCAGACCATCCAGCGCGAGGACGTC 
GGCCTGAAGCTGAACATCCGTCCGCAGATCTCCGAGGGCGGCACGGTCAAGCTCGACGTCTACCAGGAGGTC 
AGCAGCGTCGACGAGCGCGCCAGCACCGCCGCCGGGGTGGTCACCAACAAGCGCGCGATCGATACCAGCATC 
CTCCTCGACGACGGCCAGATCATGGTCCTCGGCGGCCTGTTGCAGGACAACGTGCAGGACAACACCGACGGC 
GTTCCCGGACTCTCCAGCCTCCCCGGCGTCGGCTCGCTGTTCCGCTACCAGAAGCGCTCGCGGACCAAGACC 
AACCTGATGGTCTTCCTGCGTCCCTACATCGTCCGCGACGCCGCCGCCGGGCGCAGCATCACCCTCAACCGC 
TACGACTTCATCCGCCGCGCCCAGCAGCGCGTGCAGCCGCGCCACGACTGGAGCGTCGGCGACATGCAGGCT 
CCGGTGCTGCCGCCGGCGCAGCAGGGCATCCCGCAGGCCGCCTACGACTTACGCCCGAGCCCGCGGCCGCTG 
CGCGCGGTACCGCTGGGCGAGGCGGCGCCGCTATGA