ViewGene

Locus Name:
GeneID:
Location:

GeneID:1968
TrivialName: PA14_41760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41760
PAO1 Ortholog Locus:PA1763
Sequence Length:1026
Protein Length:341
Start: 3728876
Stop: 3727851
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05152.1|AE004602_3 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 341/341 (100%), Positives = 341/341 (100%)
Sequence:
ATGAGAATCAGGGGGTACACATGCGCGGCGGCGCTGATGCTGTCTATCAGCGGTTTGTCCGTTGCCGAGGAA
GCCTCGGTCGACCAGGCCCGTGACGCGCTGGCCAAGAAGAATGACGATGCCGACAGCGCCAAGGCGCTGGAG
GAAGTCTTCCAGGCCGCCGAGAAGAGCTACACCTTGCTGAAGAAGGGCGAGCGGACCCTGACCTACGGTTTC
GACTACGCGCTGGTGCGCGACCAGCGGCTGACCCTGGTGCCGCTGACCAAGACCAGCGGCGGCACGCAGATC
TACGGCCTCGCCGGCCGGCAGAGCCAGTCCCAGCACACCTTCACCAACTCCTTCACCTTCGACTACGGGATC
TGGGACAACCTCACCTTCAGTTTCCGCCTGCCGCTGGTAGCCAAGTACGACACCGAGATGGATACCCACGCC
TACAGCCTCGGCGACGTTTCCGCGACCTTGCGCTGGCAGCCCTGGGCGGCGGTGCGCGGGCGGCCGGTCACC
ACGCTGTATACCACCATCGGCCTGCCGACCGGCGACAGTCCCTACAAGACCAACCTGGACAAGGACATCTCC
ACCGGCAACGGCTACTACAGCCTGGGCTTCGGCGCGAACATGTCCTATGTGATCGACCCGGTGGTCCTCTAC
GGCTCGCTCGGCTACACCTGGAACCTGCCGGTGGACGACGTGCACCAGACCCTGGCCGACAACTCCCAGCTG
GAGAAGGTCTCGCCCGGCAACACGATCAACTTCAACATGGGCATGGCCTACGCGCTGTCCTACGACGTCTCG
CTGGCGACTTCGTACCAGATGGCCTACACGCTGAAGAACCGCTACCACACCACTGCCGGTACGTTCGAGTCG
TCCGAACAGACCAGTAGCATCATGAACTTCTCGCTCGGCTTGCGGACGTCACCGGACTACATCGTCAACGTC
AACGCCGGTTTCGGCCTCACGGAAGACTCGCCGGATGTACTGCTGGGGTTATCCGTACCCCTCGATATCAAA
GGGCTGAAGGCCCAGTAA
Translation:
MRIRGYTCAAALMLSISGLSVAEEASVDQARDALAKKNDDADSAKALEEVFQAAEKSYTLLKKGERTLTYGF
DYALVRDQRLTLVPLTKTSGGTQIYGLAGRQSQSQHTFTNSFTFDYGIWDNLTFSFRLPLVAKYDTEMDTHA
YSLGDVSATLRWQPWAAVRGRPVTTLYTTIGLPTGDSPYKTNLDKDISTGNGYYSLGFGANMSYVIDPVVLY
GSLGYTWNLPVDDVHQTLADNSQLEKVSPGNTINFNMGMAYALSYDVSLATSYQMAYTLKNRYHTTAGTFES
SEQTSSIMNFSLGLRTSPDYIVNVNAGFGLTEDSPDVLLGLSVPLDIKGLKAQ*
AnnotationID:1977GeneID:1968
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 07:07:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1763
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3939
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21085
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1968

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3431 PA1763_tr translation of PA1763 341 99.99 99.99 0 1760.0
105510 gb|AAG05152.1|AE004602_3 (AE004602) hypothetical protein PA1763 [Pseudomonas aeruginosa PAO1] 341 99.99 99.99 0 1760.0
GC ORFID: 44970How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1763Glimmer Score:
Start: 1225033Stop: 1226058
Length: 1026
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1763 translation of PA1763Homolog Bit Score 682.0
Other Homologs: t_PA1763 (ORF: GLIMMER)
GC ORF Sequence
ATGAGAATCAGGGGGTACACATGCGCGGCGGCGCTGATGCTGTCTATCAGCGGTTTGTCCGTTGCCGAGGAA
GCCTCGGTCGACCAGGCCCGTGACGCGCTGGCCAAGAAGAATGACGATGCCGACAGCGCCAAGGCGCTGGAG
GAAGTCTTCCAGGCCGCCGAGAAGAGCTACACCTTGCTGAAGAAGGGCGAGCGGACCCTGACCTACGGTTTC
GACTACGCGCTGGTGCGCGACCAGCGGCTGACCCTGGTGCCGCTGACCAAGACCAGCGGCGGCACGCAGATC
TACGGCCTCGCCGGCCGGCAGAGCCAGTCCCAGCACACCTTCACCAACTCCTTCACCTTCGACTACGGGATC
TGGGACAACCTCACCTTCAGTTTCCGCCTGCCGCTGGTAGCCAAGTACGACACCGAGATGGATACCCACGCC
TACAGCCTCGGCGACGTTTCCGCGACCTTGCGCTGGCAGCCCTGGGCGGCGGTGCGCGGGCGGCCGGTCACC
ACGCTGTATACCACCATCGGCCTGCCGACCGGCGACAGTCCCTACAAGACCAACCTGGACAAGGACATCTCC
ACCGGCAACGGCTACTACAGCCTGGGCTTCGGCGCGAACATGTCCTATGTGATCGACCCGGTGGTCCTCTAC
GGCTCGCTCGGCTACACCTGGAACCTGCCGGTGGACGACGTGCACCAGACCCTGGCCGACAACTCCCAGCTG
GAGAAGGTCTCGCCCGGCAACACGATCAACTTCAACATGGGCATGGCCTACGCGCTGTCCTACGACGTCTCG
CTGGCGACTTCGTACCAGATGGCCTACACGCTGAAGAACCGCTACCACACCACTGCCGGTACGTTCGAGTCG
TCCGAACAGACCAGTAGCATCATGAACTTCTCGCTCGGCTTGCGGACGTCACCGGACTACATCGTCAACGTC
AACGCCGGTTTCGGCCTCACGGAAGACTCGCCGGATGTACTGCTGGGGTTATCCGTACCCCTCGATATCAAA
GGGCTGAAGGCCCAGTAA