ViewGene
Locus Name:
GeneID:
Location:

GeneID:1964
TrivialName: PA14_34490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34490
PAO1 Ortholog Locus:PA2330
Sequence Length:1068
Protein Length:355
Start: 3065399
Stop: 3066466
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05718.1|AE004659_4 (AE004659) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 353/355 (99%), Positives = 353/355 (99%)
Sequence:
ATGCTTGACCCGACCCTGAGCGACTGGCTCGACCGCCAGGCCGACGCCCTCGACCGCGGCGACGCCGATCCC
GCCGCGCTGCTGCCGCGCCTGGCCGCCGCCGGCGTGCTCGGCGTGGCGGTGGAGGAACGCCTCGGCGGCGCC
GGCGGCACGCTCGCCGACGCGGTGGAGCGGGTGGCCGCGGTGGCGGCGCGCTCGCTGACCGCGGCGTTCGTC
TTCTGGGGCCAGCGCGCCTTCATCGAGTACCTGTTGCAGAGTCCCAACCAGGAACTGCGCCAACGCCTGCTC
GGCGACCTGCTGGCCGGCCGCCTGGCCGGCGCCACCGGGCTGTCCAACGCGATGAAGTTCCTTTCCGGGATC
GAGGCGCTGCAGGTGGTGGCGCACGCGGAGGAGGCCGGCTGGCGCCTGGACGGTCGCCTGCCGTGGGTGACC
AACCTGCGCAGTGGCGATTTCGTGGTGGCGGCGGCGATCGAACGAGGGGAGGGTGGCAGTCCCTTCGTCCTG
GCGATTCCCGAAGGCCTCGCCGGCTTGCAGCGCTCGGCGGACCTGCGCCTGCTCGGCCTGCAATGCAGCAAC
ACCGCCGCCCTTGACCTGCGCGCGGTGGCGGTCGGGCGCGACTGGCTGTTGCACGACGACGCCCGGCAGTTC
CTGCCACGGGTGCGCCCGGCCTTCCTCGGCCTGCAATGCGGCATGGCCATCGGCCTGGCGCGCCGCGCACTG
GACGAAGTGCAGCGGCACCTGGGCGGCAGTCGTTCGCTGCTGGATGGTGAGCTGGCGGCACAGCGCGAAACC
CTCGACGGACACGTGGCGGCGCTGCACGCCGGACTGGCCAGCGGCGAGTTCGCCAGCCAGCCGGCACGCCTG
TTCCGCATCCGCATCGGGCTCGCCGAAGCCGCCGCCAATGCCGTGCAACTGGAGTTGCAGGCCAGCGGCGGC
AAGGCCTACCTGAGCGAGCACGGCGCCGGTTTCGCCCGCCGCTGGCGCGAGTCGGCGTTCGTCCCGATCGTT
ACGCCGAGCCTGGTGCAACTGCGCGCCGAACTGCAACGCCAGGCCGAGGCCAAGGCATGA
Translation:
MLDPTLSDWLDRQADALDRGDADPAALLPRLAAAGVLGVAVEERLGGAGGTLADAVERVAAVAARSLTAAFV
FWGQRAFIEYLLQSPNQELRQRLLGDLLAGRLAGATGLSNAMKFLSGIEALQVVAHAEEAGWRLDGRLPWVT
NLRSGDFVVAAAIERGEGGSPFVLAIPEGLAGLQRSADLRLLGLQCSNTAALDLRAVAVGRDWLLHDDARQF
LPRVRPAFLGLQCGMAIGLARRALDEVQRHLGGSRSLLDGELAAQRETLDGHVAALHAGLASGEFASQPARL
FRIRIGLAEAAANAVQLELQASGGKAYLSEHGAGFARRWRESAFVPIVTPSLVQLRAELQRQAEAKA*
AnnotationID:1973GeneID:1964
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA2330
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1960,cd00567
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69238.1|AE016558_8 (AE016787) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 354

 Score =  439 bits (1130), Expect = e-123
 Identities = 233/351 (66%), Positives = 264/351 (75%)

>gb|AAN58666.1|AE014936_6 (AE014936) putative dehydrogenase [Streptococcus mutans UA159]
          Length = 355

 Score =  278 bits (711), Expect = 4e-74
 Identities = 159/344 (46%), Positives = 208/344 (60%), Gaps = 3/344 (0%)






 
Structural Features:
COG1960, CaiA, Acyl-CoA dehydrogenases 
[Lipid metabolism]
CD-Length = 393 residues,  91.1% aligned
Score = 87.1 bits (215), Expect = 3e-18
Identities = 70/360 (19%), Positives = 124/360 (34%), Gaps = 22/360 (6%)

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  95.1% aligned
Score = 79.6 bits (196), Expect = 5e-16







   
Genomic Context:






   
Comment:


















    ReferenceID:3931




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32466




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1964_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1964
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3426
                           PA2330_tr
                           translation of PA2330
                           355
                           99.43
                           99.43
                           0
                           1762.0
     

     
     
105486
                           gb|AAG05718.1|AE004659_4
                           (AE004659) hypothetical protein PA2330 [Pseudomonas aeruginosa PAO1]
                           355
                           99.43
                           99.43
                           0
                           1762.0
     

     
     
105487
                           gb|AAN69238.1|AE016558_8
                           (AE016787) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           355
                           65.63
                           74.36
                           1
                           1127.0
     

     
     
105488
                           gb|AAN58666.1|AE014936_6
                           (AE014936) putative dehydrogenase [Streptococcus mutans UA159]
                           362
                           44.47
                           58.01
                           14
                           710.0
     

     
     
105489
                           gb|AAD53161.1|AF176824_4
                           (AF176824) SrpJ [Synechococcus sp. PCC 7942]
                           361
                           40.99
                           57.34
                           14
                           626.0
     

     






      

          
GC ORFID: 44966How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2330Glimmer Score: 

          
Start: 1888517Stop: 1887450

          
Length: 1068


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2330 translation of PA2330Homolog Bit Score 683.0

          
Other Homologs:  t_PA2330 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTGACCCGACCCTGAGCGACTGGCTCGACCGCCAGGCCGACGCCCTCGACCGCGGCGACGCCGATCCC 
GCCGCGCTGCTGCCGCGCCTGGCCGCCGCCGGCGTGCTCGGCGTGGCGGTGGAGGAACGCCTCGGCGGCGCC 
GGCGGCACGCTCGCCGACGCGGTGGAGCGGGTGGCCGCGGTGGCGGCGCGCTCGCTGACCGCGGCGTTCGTC 
TTCTGGGGCCAGCGCGCCTTCATCGAGTACCTGTTGCAGAGTCCCAACCAGGAACTGCGCCAACGCCTGCTC 
GGCGACCTGCTGGCCGGCCGCCTGGCCGGCGCCACCGGGCTGTCCAACGCGATGAAGTTCCTTTCCGGGATC 
GAGGCGCTGCAGGTGGTGGCGCACGCGGAGGAGGCCGGCTGGCGCCTGGACGGTCGCCTGCCGTGGGTGACC 
AACCTGCGCAGTGGCGATTTCGTGGTGGCGGCGGCGATCGAACGAGGGGAGGGTGGCAGTCCCTTCGTCCTG 
GCGATTCCCGAAGGCCTCGCCGGCTTGCAGCGCTCGGCGGACCTGCGCCTGCTCGGCCTGCAATGCAGCAAC 
ACCGCCGCCCTTGACCTGCGCGCGGTGGCGGTCGGGCGCGACTGGCTGTTGCACGACGACGCCCGGCAGTTC 
CTGCCACGGGTGCGCCCGGCCTTCCTCGGCCTGCAATGCGGCATGGCCATCGGCCTGGCGCGCCGCGCACTG 
GACGAAGTGCAGCGGCACCTGGGCGGCAGTCGTTCGCTGCTGGATGGTGAGCTGGCGGCACAGCGCGAAACC 
CTCGACGGACACGTGGCGGCGCTGCACGCCGGACTGGCCAGCGGCGAGTTCGCCAGCCAGCCGGCACGCCTG 
TTCCGCATCCGCATCGGGCTCGCCGAAGCCGCCGCCAATGCCGTGCAACTGGAGTTGCAGGCCAGCGGCGGC 
AAGGCCTACCTGAGCGAGCACGGCGCCGGTTTCGCCCGCCGCTGGCGCGAGTCGGCGTTCGTCCCGATCGTT 
ACGCCGAGCCTGGTGCAACTGCGCGCCGAACTGCAACGCCAGGCCGAGGCCAAGGCATGA