ViewGene

Locus Name:
GeneID:
Location:

GeneID:1963
TrivialName: PA14_43300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43300
PAO1 Ortholog Locus:PA1640
Sequence Length:1038
Protein Length:345
Start: 3856727
Stop: 3857764
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05029.1|AE004591_9 (AE004591) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 345/345 (100%), Positives = 345/345 (100%)
Sequence:
ATGAGCAAACAGGTCGCCCTGGTATTGGGCTCCGGCGGTGCGCGCGGCTACGCGCACATCGGCGTGATCGAG
GAACTCGAGGCGCGCGGCTATGAGATCACCTGCATCGCCGGTTGTTCCATGGGCTCGGTGATCGGCGGCATC
TACGCCGCCGGCAAGCTGCGCGAGTACCGCGAGTGGGTGGAAAGCCTGGATTACCTCGACGTGCTGCGCCTG
CTCGACGTCAGCTTCCGCCTCGGCGCGATCCGCGGCGAGCGGGTGTTCGGCAAGATCCACGAGATCCTCGGG
GAGGTGAACATCGAGGACCTGTCGATCCCCTACACGGCGGTTGCCACCGACCTCACCAACCAGCAGGAAATC
TGGTTCCAGGAAGGCTGCCTGCACCAGGCCATGCGCGCCTCGGCGGCGATCCCCAGCCTGTTCACCCCGGTC
ATGCAGGGCAGCCGCATGCTGGTCGACGGCGGCCTGCTCAACCCGTTGCCGATCGTGCCGGTGGTGTCGGCC
CACAGCGACCTGATCATCGCGGTCAACCTCAACGCCACCAACCAGAAGCAATACCACCTGCCGGTGATCGAG
CGTCCGGCCGCGCTCAAGGGGCGCTTCGACAGCATGATCGAGAGCCTCGGCCACAAACTCTCGTTCTTCCGC
CGCCACGGCGACGACAATACCCCGCCGGAGCTGAGCGCCGACGCCCTGCTCCATCCGGTTCCGGCGGAATCC
GAGGAGCCCGCCGAGCCGCAACTGCAACAGCCGGCCGCGGCGCCGCAAGGCAAGGACTCGCCGAAGTCGGCC
AGCGGCACCACGGTGGTGGAAAGCAGCGGTCCGGCATCGCTGCTGGAACTGGTCAACCAGAGCTTCGAGGTG
ATGCAGACCTCGTTGGCGCAGTACAAGATCGCCGGCTACCCGCCGGACATCCTGATCAACGTGCCGAAGCGG
GTCTGCCGCTTCTTCGAGTTCTACAAGGCGCCGGAGCTGATCGCCCTCGGCCGGCAGATCGCCAGCGACACC
CTGGACCGCTACGAGGAAGACAACGCCTGA
Translation:
MSKQVALVLGSGGARGYAHIGVIEELEARGYEITCIAGCSMGSVIGGIYAAGKLREYREWVESLDYLDVLRL
LDVSFRLGAIRGERVFGKIHEILGEVNIEDLSIPYTAVATDLTNQQEIWFQEGCLHQAMRASAAIPSLFTPV
MQGSRMLVDGGLLNPLPIVPVVSAHSDLIIAVNLNATNQKQYHLPVIERPAALKGRFDSMIESLGHKLSFFR
RHGDDNTPPELSADALLHPVPAESEEPAEPQLQQPAAAPQGKDSPKSASGTTVVESSGPASLLELVNQSFEV
MQTSLAQYKIAGYPPDILINVPKRVCRFFEFYKAPELIALGRQIASDTLDRYEEDNA*
AnnotationID:1972GeneID:1963
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:18
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:PA1640
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative phopholipase
Functional Category Confidence Code:5
COGs:COG1752,pfam01734
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily
CD-Length = 306 residues,  84.3% aligned
Score =  182 bits (463), Expect = 5e-47
Identities = 93/258 (36%), Positives = 133/258 (51%), Gaps = 25/258 (9%)

pfam01734, Patatin, Patatin-like phospholipase.
CD-Length = 179 residues,  97.8% aligned
Score =  119 bits (299), Expect = 6e-28
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 19/175 (10%)
Genomic Context:
Comment:
ReferenceID:3929
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21075
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37221
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1963_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1963

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3425 PA1640_tr translation of PA1640 345 99.99 99.99 0 1763.0
105478 gb|AAG05029.1|AE004591_9 (AE004591) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 345 99.99 99.99 0 1763.0
105479 gb|AAN67918.1|AE016424_4 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 351 74.64 86.60 9 1349.0
105480 gb|AAO76123.1| (AE016930) conserved protein with a conserved patatin-like phospholipase domain [Bacteroides thetaiotaomicron VPI-5482] 349 31.23 46.13 93 460.0
105483 emb|CAC44354.1| (AJ410309) RssA protein [Erwinia chrysanthemi] 366 29.50 45.35 83 424.0
GC ORFID: 44965How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1640Glimmer Score:
Start: 1097182Stop: 1096145
Length: 1038
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1640 translation of PA1640Homolog Bit Score 683.0
Other Homologs: t_PA1640 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAAACAGGTCGCCCTGGTATTGGGCTCCGGCGGTGCGCGCGGCTACGCGCACATCGGCGTGATCGAG
GAACTCGAGGCGCGCGGCTATGAGATCACCTGCATCGCCGGTTGTTCCATGGGCTCGGTGATCGGCGGCATC
TACGCCGCCGGCAAGCTGCGCGAGTACCGCGAGTGGGTGGAAAGCCTGGATTACCTCGACGTGCTGCGCCTG
CTCGACGTCAGCTTCCGCCTCGGCGCGATCCGCGGCGAGCGGGTGTTCGGCAAGATCCACGAGATCCTCGGG
GAGGTGAACATCGAGGACCTGTCGATCCCCTACACGGCGGTTGCCACCGACCTCACCAACCAGCAGGAAATC
TGGTTCCAGGAAGGCTGCCTGCACCAGGCCATGCGCGCCTCGGCGGCGATCCCCAGCCTGTTCACCCCGGTC
ATGCAGGGCAGCCGCATGCTGGTCGACGGCGGCCTGCTCAACCCGTTGCCGATCGTGCCGGTGGTGTCGGCC
CACAGCGACCTGATCATCGCGGTCAACCTCAACGCCACCAACCAGAAGCAATACCACCTGCCGGTGATCGAG
CGTCCGGCCGCGCTCAAGGGGCGCTTCGACAGCATGATCGAGAGCCTCGGCCACAAACTCTCGTTCTTCCGC
CGCCACGGCGACGACAATACCCCGCCGGAGCTGAGCGCCGACGCCCTGCTCCATCCGGTTCCGGCGGAATCC
GAGGAGCCCGCCGAGCCGCAACTGCAACAGCCGGCCGCGGCGCCGCAAGGCAAGGACTCGCCGAAGTCGGCC
AGCGGCACCACGGTGGTGGAAAGCAGCGGTCCGGCATCGCTGCTGGAACTGGTCAACCAGAGCTTCGAGGTG
ATGCAGACCTCGTTGGCGCAGTACAAGATCGCCGGCTACCCGCCGGACATCCTGATCAACGTGCCGAAGCGG
GTCTGCCGCTTCTTCGAGTTCTACAAGGCGCCGGAGCTGATCGCCCTCGGCCGGCAGATCGCCAGCGACACC
CTGGACCGCTACGAGGAAGACAACGCCTGA