ViewGene
Locus Name:
GeneID:
Location:

GeneID:1961
TrivialName: PA14_60230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60230
PAO1 Ortholog Locus:PA4545
Sequence Length:1026
Protein Length:341
Start: 5364428
Stop: 5365453
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81267.1| (AY273871) competence protein [Pseudomonas aeruginosa]
Identities = 341/341 (100%), Positives = 341/341 (100%)
Sequence:
ATGCAAGTGAAACACCTGCTGCTGATCGCCATCCTCGCCCTCACCGCAGCCTGCTCCTCGAACAAGGAGACT
GTCGACGAGAACCTGAGCGAGAGCCAGCTGTACCAGCAGGCGCAGGACGACCTCAACAACAAGAGCTACAAC
AGCGCCGTCACCAAGCTGAAAGCCCTCGAATCGCGCTATCCCTTCGGCCGCTACGCCGAGCAGGCCCAGCTC
GAGCTGATCTACGCCAACTACAAGAACATGGAGCCCGAAGCCGCCCGCGCCGCCGCCGAACGCTTCATCCGC
CTGCATCCGCAGCACCCCAACGTCGACTACGCCTACTACCTCAAAGGCCTGTCCTCCTTCGACCAGGACCGC
GGCCTGCTGGCGCGCTTCCTGCCGCTGGACATGACCAAGCGCGACCCGGGCGCCGCCCGCGACTCCTTCAAC
GAGTTCGCCCAGCTCACCAGCCGCTTCCCCAACAGCCGCTACGCCCCGGACGCCAAGGCGCGCATGGTGTAC
CTGCGCAACCTGCTGGCGGCCTACGAAGTGCACGTCGGCCACTACTACCTGAAGCGCCAGGCCTATGTCGCC
GCCGCCAACCGCGGTCGCTACGTGGTGGAGAACTTCCAGGAAACCCCGGCCGTCGGCGATGGCCTGGCGATC
ATGGTCGAAGCCTACCGTCGCCTGGGTCTCGACGACCTGGCCAGCACCAGCCTGGAAACCCTCAAGCTGAAC
TATCCGGATAACGCCAGCCTCAAGGATGGCGAGTTCGTCGCCCGCGAAAGCGAGGCCGACACCCGCTCCTGG
CTGGCCAAGGCCACCCTGGGCCTGATCGAAGGCGGCGAGCCGCCGCCGCACATGGAAACCCAGGCCGCCAAG
GACGTGATCAAGCAGTACGAGGATGCCGAGCGGGAGATCCCCGCCGAACTGAAGCCGGAAAACCAGGATCAC
AGCGCCGACGACGAGAAGCCGGAGAGCGATGACGACGAGGACTCCGGTCGCTCCTGGTGGAGCTACATGACC
TTCGGTCTCTTCGACTGA
Translation:
MQVKHLLLIAILALTAACSSNKETVDENLSESQLYQQAQDDLNNKSYNSAVTKLKALESRYPFGRYAEQAQL
ELIYANYKNMEPEAARAAAERFIRLHPQHPNVDYAYYLKGLSSFDQDRGLLARFLPLDMTKRDPGAARDSFN
EFAQLTSRFPNSRYAPDAKARMVYLRNLLAAYEVHVGHYYLKRQAYVAAANRGRYVVENFQETPAVGDGLAI
MVEAYRRLGLDDLASTSLETLKLNYPDNASLKDGEFVARESEADTRSWLAKATLGLIEGGEPPPHMETQAAK
DVIKQYEDAEREIPAELKPENQDHSADDEKPESDDDEDSGRSWWSYMTFGLFD*
AnnotationID:1970GeneID:1961
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 05:05:14
Gene Name:comL
Confidence Code:2
GeneProduct:competence lipoprotein ComL
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4105
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66248.1|AE016253_3 (AE016776) competence lipoprotein ComL, putative [Pseudomonas
           putida KT2440]
          Length = 339

 Score =  530 bits (1364), Expect = e-150
 Identities = 262/341 (76%), Positives = 299/341 (87%), Gaps = 2/341 (0%)

>gb|AAG10500.1|AF279106_62 (AF279106) predicted secreted lipoprotein [uncultured
           proteobacterium EBAC31A08]
          Length = 272

 Score =  210 bits (534), Expect = 1e-53
 Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 2/243 (0%)






 
Structural Features:
COG4105, ComL, DNA uptake lipoprotein 
CD-Length = 254 residues, 100.0% aligned
Score =  263 bits (673), Expect = 6e-71
Identities = 122/270 (45%), Positives = 160/270 (59%), Gaps = 19/270 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3925




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31663




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:1961_cdd.html


    		




 
URL:

















    ReferenceID:32998




  
Author/Investigator(s):
        van Sinderen D, Withoff S, Boels H, Venema G.





  
Title:
        solation and characterization of comL, a transcription unit involved in competence development of Bacillus subtilis.




  
PubMed:
        2125113


MedLine:
        




    
Source:
Mol Gen Genet. 1990 Dec;224(3):396-404.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2125113









           
Homologs By Global Alignment 

           

       



     
Gene ID:1961
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3423
                           PA4545_tr
                           translation of PA4545
                           341
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105444
                           gb|AAP81267.1|
                           (AY273871) competence protein [Pseudomonas aeruginosa]
                           341
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105445
                           gb|AAG07933.1|AE004868_4
                           (AE004868) competence protein ComL [Pseudomonas aeruginosa PAO1]
                           341
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105446
                           emb|CAA78141.1|
                           (Z12154) putative protein of no known function [Pseudomonas aeruginosa]
                           341
                           99.41
                           99.41
                           0
                           1753.0
     

     
     
105447
                           gb|AAN66248.1|AE016253_3
                           (AE016776) competence lipoprotein ComL, putative [Pseudomonas putida KT2440]
                           341
                           76.83
                           87.68
                           2
                           1366.0
     

     






      

          
GC ORFID: 44963How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4545Glimmer Score: 

          
Start: 4628107Stop: 4629132

          
Length: 1026


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4545 translation of PA4545Homolog Bit Score 684.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3555 (ORF: BLASTX 516.0), t_PA4545 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGTGAAACACCTGCTGCTGATCGCCATCCTCGCCCTCACCGCAGCCTGCTCCTCGAACAAGGAGACT 
GTCGACGAGAACCTGAGCGAGAGCCAGCTGTACCAGCAGGCGCAGGACGACCTCAACAACAAGAGCTACAAC 
AGCGCCGTCACCAAGCTGAAAGCCCTCGAATCGCGCTATCCCTTCGGCCGCTACGCCGAGCAGGCCCAGCTC 
GAGCTGATCTACGCCAACTACAAGAACATGGAGCCCGAAGCCGCCCGCGCCGCCGCCGAACGCTTCATCCGC 
CTGCATCCGCAGCACCCCAACGTCGACTACGCCTACTACCTCAAAGGCCTGTCCTCCTTCGACCAGGACCGC 
GGCCTGCTGGCGCGCTTCCTGCCGCTGGACATGACCAAGCGCGACCCGGGCGCCGCCCGCGACTCCTTCAAC 
GAGTTCGCCCAGCTCACCAGCCGCTTCCCCAACAGCCGCTACGCCCCGGACGCCAAGGCGCGCATGGTGTAC 
CTGCGCAACCTGCTGGCGGCCTACGAAGTGCACGTCGGCCACTACTACCTGAAGCGCCAGGCCTATGTCGCC 
GCCGCCAACCGCGGTCGCTACGTGGTGGAGAACTTCCAGGAAACCCCGGCCGTCGGCGATGGCCTGGCGATC 
ATGGTCGAAGCCTACCGTCGCCTGGGTCTCGACGACCTGGCCAGCACCAGCCTGGAAACCCTCAAGCTGAAC 
TATCCGGATAACGCCAGCCTCAAGGATGGCGAGTTCGTCGCCCGCGAAAGCGAGGCCGACACCCGCTCCTGG 
CTGGCCAAGGCCACCCTGGGCCTGATCGAAGGCGGCGAGCCGCCGCCGCACATGGAAACCCAGGCCGCCAAG 
GACGTGATCAAGCAGTACGAGGATGCCGAGCGGGAGATCCCCGCCGAACTGAAGCCGGAAAACCAGGATCAC 
AGCGCCGACGACGAGAAGCCGGAGAGCGATGACGACGAGGACTCCGGTCGCTCCTGGTGGAGCTACATGACC 
TTCGGTCTCTTCGACTGA