ViewGene
Locus Name:
GeneID:
Location:

GeneID:1960
TrivialName: PA14_13040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13040
PAO1 Ortholog Locus:PA3929
Sequence Length:1008
Protein Length:335
Start: 1119369
Stop: 1120376
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07316.1|AE004810_8 (AE004810) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa PAO1]
Identities = 335/335 (100%), Positives = 335/335 (100%)
Sequence:
ATGGGTATCGATCTTCCCCTCATCTGGGCGGTCATCATCATCTTCGGCATCATGATGTACGTGGTGATGGAC
GGCTTCGACCTGGGCATCGGCATGCTCTATCCGTTCTTCAAGGACAGCGGCGACCGCGATGTGATGATGAAC
ACCGTGGCGCCAGTCTGGGACGGCAACGAGACCTGGCTGGTGCTGGGCGGCGCGGCGTTGTTCGGGGCCTTC
CCGCTGGCCTACGCGGTGGTCCTGTCGGCGCTCTACCTGCCGTTGATCTTCATGCTCGTCGGGCTGATCTTC
CGCGGCGTCGCCTTCGAGTTCCGCTTCAAGGCCAAGCCGGCCAAGCAGCACATCTGGGACAAGGCGTTCATC
GGCGGTTCGCTGGTGGCGACCTTCTTCCAGGGCGTGGCGCTGGGCGCCTTCATCGAAGGCATCCCGGTGGAG
AACCGCAGCTTCGCCGGCGGTTCGCTGGACTGGATCGCGCCGTTCCCGCTGTTCTGCGGCCTGGCCCTGATC
GTCGCCTACACCCTGCTTGGCTGCACCTGGCTGATCATGAAGACCGAAGGCCGCCTGCAGGAGCGCATGCAC
GACCTGGCGCGCCCGCTGGCGCTGGTGCTGCTGGCGATCATCGGGGTGGTCAGCCTGTGGACGCCGCTGGCC
CATGCCGAGATCGCCGCACGCTGGTTCAGCCTGCCGAACCTGTTCTGGTTCCTGCCGGTGCCGATCCTGGTC
CTGGTGACTTTCTATGCGCTGCTGCGCTCGGTGGCCAACAACGACCACGTGAAGCCGTTCGTGCTCACCCTG
GTGTTGATCTTCCTCGGCTACAGCGGCCTGGGGATCAGCCTGTGGCCGAACATCATCCCGCCGGCGGTGAGC
ATCTGGGAGGCCTCGGCGCCGCCGCAGAGCCAGGGCTTCATGCTGGTCGGCGCGCTGTTCATCATTCCCTTC
ATCCTCGGCTACACCGCCTGGAGCTACTACGTGTTCCGCGGCAAGGTGAAGCACGGCGATGGCTATCACTGA
Translation:
MGIDLPLIWAVIIIFGIMMYVVMDGFDLGIGMLYPFFKDSGDRDVMMNTVAPVWDGNETWLVLGGAALFGAF
PLAYAVVLSALYLPLIFMLVGLIFRGVAFEFRFKAKPAKQHIWDKAFIGGSLVATFFQGVALGAFIEGIPVE
NRSFAGGSLDWIAPFPLFCGLALIVAYTLLGCTWLIMKTEGRLQERMHDLARPLALVLLAIIGVVSLWTPLA
HAEIAARWFSLPNLFWFLPVPILVLVTFYALLRSVANNDHVKPFVLTLVLIFLGYSGLGISLWPNIIPPAVS
IWEASAPPQSQGFMLVGALFIIPFILGYTAWSYYVFRGKVKHGDGYH*
AnnotationID:1969GeneID:1960
AnnotatorUID: urbach
Modification Date/Time: 2004-03-26 01:01:34
Gene Name:cioB
Confidence Code:1
GeneProduct:CioB, cyanide insensitive terminal oxidase
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02322,COG1294
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31596




  
Author/Investigator(s):
        Williams,H.D.





  
Title:
        The cioAB genes from Pseudomonas aeruginosa code for a novel cyanide-insensitive terminal oxidase related to the cytochrome bd
quinol oxidases




  
PubMed:
        9179851


MedLine:
        97323403




    
Source:
Mol. Microbiol. 24 (3), 579-591 (1997)






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=97323403&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:1960
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3422
                           PA3929_tr
                           translation of PA3929
                           335
                           99.99
                           99.99
                           0
                           1765.0
     

     
     
105409
                           gb|AAG07316.1|AE004810_8
                           (AE004810) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa PAO1]
                           335
                           99.99
                           99.99
                           0
                           1765.0
     

     
     
105410
                           emb|CAA71556.1|
                           (Y10528) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa]
                           335
                           99.99
                           99.99
                           0
                           1765.0
     

     
     
105411
                           gb|AAO58093.1|
                           (AE016872) cyanide-insensitive terminal oxidase CioB [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           83.28
                           91.64
                           0
                           1525.0
     

     
     
105412
                           gb|AAN70223.1|AE016661_9
                           (AE016791) ubiquinol oxidase subunit II, cyanide insensitive [Pseudomonas putida KT2440]
                           335
                           81.79
                           90.44
                           0
                           1500.0
     

     






      

          
GC ORFID: 44962How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3929Glimmer Score: 

          
Start: 3834569Stop: 3833562

          
Length: 1008


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3929 translation of PA3929Homolog Bit Score 684.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5396 (ORF: BLASTX 594.0), t_PA3929 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTATCGATCTTCCCCTCATCTGGGCGGTCATCATCATCTTCGGCATCATGATGTACGTGGTGATGGAC 
GGCTTCGACCTGGGCATCGGCATGCTCTATCCGTTCTTCAAGGACAGCGGCGACCGCGATGTGATGATGAAC 
ACCGTGGCGCCAGTCTGGGACGGCAACGAGACCTGGCTGGTGCTGGGCGGCGCGGCGTTGTTCGGGGCCTTC 
CCGCTGGCCTACGCGGTGGTCCTGTCGGCGCTCTACCTGCCGTTGATCTTCATGCTCGTCGGGCTGATCTTC 
CGCGGCGTCGCCTTCGAGTTCCGCTTCAAGGCCAAGCCGGCCAAGCAGCACATCTGGGACAAGGCGTTCATC 
GGCGGTTCGCTGGTGGCGACCTTCTTCCAGGGCGTGGCGCTGGGCGCCTTCATCGAAGGCATCCCGGTGGAG 
AACCGCAGCTTCGCCGGCGGTTCGCTGGACTGGATCGCGCCGTTCCCGCTGTTCTGCGGCCTGGCCCTGATC 
GTCGCCTACACCCTGCTTGGCTGCACCTGGCTGATCATGAAGACCGAAGGCCGCCTGCAGGAGCGCATGCAC 
GACCTGGCGCGCCCGCTGGCGCTGGTGCTGCTGGCGATCATCGGGGTGGTCAGCCTGTGGACGCCGCTGGCC 
CATGCCGAGATCGCCGCACGCTGGTTCAGCCTGCCGAACCTGTTCTGGTTCCTGCCGGTGCCGATCCTGGTC 
CTGGTGACTTTCTATGCGCTGCTGCGCTCGGTGGCCAACAACGACCACGTGAAGCCGTTCGTGCTCACCCTG 
GTGTTGATCTTCCTCGGCTACAGCGGCCTGGGGATCAGCCTGTGGCCGAACATCATCCCGCCGGCGGTGAGC 
ATCTGGGAGGCCTCGGCGCCGCCGCAGAGCCAGGGCTTCATGCTGGTCGGCGCGCTGTTCATCATTCCCTTC 
ATCCTCGGCTACACCGCCTGGAGCTACTACGTGTTCCGCGGCAAGGTGAAGCACGGCGATGGCTATCACTGA