ViewGene
Locus Name:
GeneID:
Location:

GeneID:1959
TrivialName: PA14_24230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24230
PAO1 Ortholog Locus:PA3087
Sequence Length:981
Protein Length:326
Start: 2102217
Stop: 2103197
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06475.1|AE004733_2 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 326/326 (100%), Positives = 326/326 (100%)
Sequence:
ATGCAACTCGACCCCGGACGTGGCTACGACCTGATCGGCGATGTCCACGGCTGCGCGCATACCCTGGACCGC
CTCCTCGACCTGCTCGGCTACCGCCTGCAGGGCGGCGTCTGGCGCCATCCGCGGCGCCAGGCGCTGTTCCTC
GGCGACATCGTCGATCGCGGCCCGCGCATCCGCGAGGCCCTGCACCGGGTGCACGCGATGGTCGACGCCGGC
GAGGCGCTGTGCATCATGGGCAACCACGAATTCAACGCGCTCGGCTGGAGCACCCCGGCGGCGCCCGGCAGC
GGCCGCCAGTACGTCCGCGAGCATACGCCGCGGCATGCCCGGCTGATCAAGGAGACCCTCGAGCAGTTCGAG
GGCCACGACGCCGACTGGCGCGACTTCCTCGGCTGGTTCCAGCAACTGCCGCTGTTCCTCGATGCCGGGCGC
TTCCGCATGGTCCATGCCTGCTGGGACGGCGAACTGATCGCGACCCTGCGCCGGCAGTTCCCCGACGGGCGG
ATCAGCGAAGCCTTCCTGCAGGAGTCGGCGGAGCCCGGCAGCTTCGCCGACCTGGCCTGCAACCGCCTGCTG
CGCGGTACCGACATGCGCCTGCCGCACGGTGCCACGCTGACCAGCAGCGATGGCTATACGCGCGCCTTCTTC
CGCACCAAGTTCTGGGTCGAGGACGAGGCGCCGCGCACCTACGGCGATATCGTCTTCCAGCCCGACGCGTTG
CCCGAAGCGATCGCCCGCGAGCCGCTCAGCGAGGAGCAGAAGTCCAGCCTGCTGACCTACGGCGCCGACGAA
CCGCTGTTGTTCGTCGGCCACTACTGGCGACGCGGCACGCCGGCGCCGATCCGGCCGAACCTGGCCTGCCTG
GACTACAGCGCGGTGATGTACGGCAAGCTGGCGGCCTACCGCCTGGATGAGGAAACCCGCCTGGACCGGCAC
AAGTTCGTCTGGGTCGAAGTGAAGCGGCCGGAGGCTGACGAGTGA
Translation:
MQLDPGRGYDLIGDVHGCAHTLDRLLDLLGYRLQGGVWRHPRRQALFLGDIVDRGPRIREALHRVHAMVDAG
EALCIMGNHEFNALGWSTPAAPGSGRQYVREHTPRHARLIKETLEQFEGHDADWRDFLGWFQQLPLFLDAGR
FRMVHACWDGELIATLRRQFPDGRISEAFLQESAEPGSFADLACNRLLRGTDMRLPHGATLTSSDGYTRAFF
RTKFWVEDEAPRTYGDIVFQPDALPEAIAREPLSEEQKSSLLTYGADEPLLFVGHYWRRGTPAPIRPNLACL
DYSAVMYGKLAAYRLDEETRLDRHKFVWVEVKRPEADE*
AnnotationID:1968GeneID:1959
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3087
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00149
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Metallophos, Calcineurin-like phosphoesterase






   
Genomic Context:






   
Comment:


















    ReferenceID:3921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1959
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3421
                           PA3087_tr
                           translation of PA3087
                           326
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105405
                           gb|AAG06475.1|AE004733_2
                           (AE004733) hypothetical protein PA3087 [Pseudomonas aeruginosa PAO1]
                           326
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105406
                           gb|AAN67627.1|AE016392_8
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           326
                           74.23
                           82.51
                           3
                           1336.0
     

     
     
105407
                           gb|AAO57261.1|
                           (AE016869) serine/threonine protein phosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           326
                           69.93
                           79.75
                           3
                           1253.0
     

     
     
105408
                           emb|CAD77947.1|
                           (BX294156) probable diadenosine tetraphosphatase [Pirellula sp.] [Pirellula sp. 1]
                           327
                           38.83
                           54.12
                           19
                           584.0
     

     






      

          
GC ORFID: 44961How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3087Glimmer Score: 

          
Start: 2851714Stop: 2850734

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3087 translation of PA3087Homolog Bit Score 684.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene720 (ORF: BLASTX 486.0), t_PA3087 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTCGACCCCGGACGTGGCTACGACCTGATCGGCGATGTCCACGGCTGCGCGCATACCCTGGACCGC 
CTCCTCGACCTGCTCGGCTACCGCCTGCAGGGCGGCGTCTGGCGCCATCCGCGGCGCCAGGCGCTGTTCCTC 
GGCGACATCGTCGATCGCGGCCCGCGCATCCGCGAGGCCCTGCACCGGGTGCACGCGATGGTCGACGCCGGC 
GAGGCGCTGTGCATCATGGGCAACCACGAATTCAACGCGCTCGGCTGGAGCACCCCGGCGGCGCCCGGCAGC 
GGCCGCCAGTACGTCCGCGAGCATACGCCGCGGCATGCCCGGCTGATCAAGGAGACCCTCGAGCAGTTCGAG 
GGCCACGACGCCGACTGGCGCGACTTCCTCGGCTGGTTCCAGCAACTGCCGCTGTTCCTCGATGCCGGGCGC 
TTCCGCATGGTCCATGCCTGCTGGGACGGCGAACTGATCGCGACCCTGCGCCGGCAGTTCCCCGACGGGCGG 
ATCAGCGAAGCCTTCCTGCAGGAGTCGGCGGAGCCCGGCAGCTTCGCCGACCTGGCCTGCAACCGCCTGCTG 
CGCGGTACCGACATGCGCCTGCCGCACGGTGCCACGCTGACCAGCAGCGATGGCTATACGCGCGCCTTCTTC 
CGCACCAAGTTCTGGGTCGAGGACGAGGCGCCGCGCACCTACGGCGATATCGTCTTCCAGCCCGACGCGTTG 
CCCGAAGCGATCGCCCGCGAGCCGCTCAGCGAGGAGCAGAAGTCCAGCCTGCTGACCTACGGCGCCGACGAA 
CCGCTGTTGTTCGTCGGCCACTACTGGCGACGCGGCACGCCGGCGCCGATCCGGCCGAACCTGGCCTGCCTG 
GACTACAGCGCGGTGATGTACGGCAAGCTGGCGGCCTACCGCCTGGATGAGGAAACCCGCCTGGACCGGCAC 
AAGTTCGTCTGGGTCGAAGTGAAGCGGCCGGAGGCTGACGAGTGA