ViewGene
Locus Name:
GeneID:
Location:

GeneID:1958
TrivialName: PA14_41650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41650
PAO1 Ortholog Locus:PA1771
Sequence Length:1011
Protein Length:336
Start: 3718191
Stop: 3717181
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05160.1|AE004602_11 (AE004602) probable esterase/lipase [Pseudomonas aeruginosa PAO1]
Identities = 334/336 (99%), Positives = 335/336 (99%)
Sequence:
ATGCAAAGCAGTAGTCGCCTCTTTCCTGTCGCCCTGGTCAGCGCCGAATTGCGCGCCGACCTTACCGAAGAC
ATCTACCGCCTGAAGCCCGGCAACAGCCCCGATGCCAGCGTCGAGCTAGTCGTAACCCGGCTCGGACAGCAG
GCCGCCGGCGAGCGGCGCGGACCGCCTGTGATCCTCCTGCACGGGAGTTTTTCCAACCGCCGCTTCTGGTAC
TCGCCGCGTGCGCTCGGATTAGGTCCTTACCTGGCGCGGGCGGGGTTCGATGTCTGGCTGCCGGAAATGCGC
GGCCATGGCCTGTCGATTCGCAACGATGGTTACCGGGACAACCGGGTCGCCGACTACGCGCGCTACGACCTG
CCGGCGCTGGCCTCCTTCATCCACGAGCAGTGCGGGCAGCCGGCGCACTGGATTGGCCACTCCCTCGGTGGG
GTGGTGCTGGCGGCGGGGCTGGGCGGGGGCTACCTGGACCAGGCACGGATCGCTTCCGTGGCGTTGTTCGGT
AGCCAGGTCAGCACCGCGCACTGGCTGTTCAGGTTGCCCATGGCAGGCATCCTCGCGCGCCTGCTGCTGCGC
CGCGTCGACGCGCTATCCGGAAGCCGTTGGCGGCAGGGCCCGGAAGACGAGCCGGTCGGCGTGGCGCTGGAG
GTCCTGCGTTGGCATGGGCTGTTCGGCCGCTTCGGCGAGCCGGGCAACGACTGGTGGAAGGGGCTCGCCGCA
GTCGACGTGCCGCTATTGGCGGTCGCCGGGGCTGGGGACCGGCAGGACCCGTCCTGGGCCTGTCGCAAGTTG
TTCGAGCAGTTCGCCTCGTCCGAGCGCGAATACCTGTTGCTCGGACGCGAGGCTGGCTACGCCGAGGACTAC
GGGCATATCGAGATGCTGATCGGCAAGGCGGCCCAGCTAGAGGTCTGGCCCTTGGTGGAGCGCTGGCTGCGC
CAGCGATCGCCGGCGGGCGACGAATCCGCGTGGAGTGAGGCGCTAGACGTATCGGAAGCCGGAATCAGCGGC
TAA
Translation:
MQSSSRLFPVALVSAELRADLTEDIYRLKPGNSPDASVELVVTRLGQQAAGERRGPPVILLHGSFSNRRFWY
SPRALGLGPYLARAGFDVWLPEMRGHGLSIRNDGYRDNRVADYARYDLPALASFIHEQCGQPAHWIGHSLGG
VVLAAGLGGGYLDQARIASVALFGSQVSTAHWLFRLPMAGILARLLLRRVDALSGSRWRQGPEDEPVGVALE
VLRWHGLFGRFGEPGNDWWKGLAAVDVPLLAVAGAGDRQDPSWACRKLFEQFASSEREYLLLGREAGYAEDY
GHIEMLIGKAAQLEVWPLVERWLRQRSPAGDESAWSEALDVSEAGISG*
AnnotationID:1967GeneID:1958
AnnotatorUID: diggins
Modification Date/Time: 2005-01-16 08:08:51
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:estX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative lipase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD45978.1| (AF115334) EstX [Pseudomonas fluorescens]
          Length = 329

 Score =  444 bits (1142), Expect = e-124
 Identities = 209/312 (66%), Positives = 243/312 (77%)

>gb|AAO55807.1| (AE016864) esterase/lipase/thioesterase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 330

 Score =  433 bits (1113), Expect = e-121
 Identities = 209/316 (66%), Positives = 243/316 (76%), Gaps = 1/316 (0%)

>gb|AAN67697.1|AE016400_5 (AE016781) lipase, putative [Pseudomonas putida KT2440]
          Length = 330

 Score =  427 bits (1098), Expect = e-119
 Identities = 200/311 (64%), Positives = 245/311 (78%), Gaps = 1/311 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37151




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1958_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1958
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3420
                           PA1771_tr
                           translation of PA1771
                           336
                           99.40
                           99.70
                           0
                           1765.0
     

     
     
105401
                           gb|AAG05160.1|AE004602_11
                           (AE004602) probable esterase/lipase [Pseudomonas aeruginosa PAO1]
                           336
                           99.40
                           99.70
                           0
                           1765.0
     

     
     
105402
                           gb|AAD45978.1|
                           (AF115334) EstX [Pseudomonas fluorescens]
                           339
                           62.53
                           73.74
                           13
                           1131.0
     

     
     
105403
                           gb|AAO55807.1|
                           (AE016864) esterase/lipase/thioesterase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           337
                           62.31
                           73.29
                           8
                           1109.0
     

     
     
105404
                           gb|AAN67697.1|AE016400_5
                           (AE016781) lipase, putative [Pseudomonas putida KT2440]
                           337
                           60.23
                           74.48
                           8
                           1096.0
     

     






      

          
GC ORFID: 44960How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1771Glimmer Score: 

          
Start: 1235718Stop: 1236728

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1771 translation of PA1771Homolog Bit Score 684.0

          
Other Homologs:  t_PA1771 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAGCAGTAGTCGCCTCTTTCCTGTCGCCCTGGTCAGCGCCGAATTGCGCGCCGACCTTACCGAAGAC 
ATCTACCGCCTGAAGCCCGGCAACAGCCCCGATGCCAGCGTCGAGCTAGTCGTAACCCGGCTCGGACAGCAG 
GCCGCCGGCGAGCGGCGCGGACCGCCTGTGATCCTCCTGCACGGGAGTTTTTCCAACCGCCGCTTCTGGTAC 
TCGCCGCGTGCGCTCGGATTAGGTCCTTACCTGGCGCGGGCGGGGTTCGATGTCTGGCTGCCGGAAATGCGC 
GGCCATGGCCTGTCGATTCGCAACGATGGTTACCGGGACAACCGGGTCGCCGACTACGCGCGCTACGACCTG 
CCGGCGCTGGCCTCCTTCATCCACGAGCAGTGCGGGCAGCCGGCGCACTGGATTGGCCACTCCCTCGGTGGG 
GTGGTGCTGGCGGCGGGGCTGGGCGGGGGCTACCTGGACCAGGCACGGATCGCTTCCGTGGCGTTGTTCGGT 
AGCCAGGTCAGCACCGCGCACTGGCTGTTCAGGTTGCCCATGGCAGGCATCCTCGCGCGCCTGCTGCTGCGC 
CGCGTCGACGCGCTATCCGGAAGCCGTTGGCGGCAGGGCCCGGAAGACGAGCCGGTCGGCGTGGCGCTGGAG 
GTCCTGCGTTGGCATGGGCTGTTCGGCCGCTTCGGCGAGCCGGGCAACGACTGGTGGAAGGGGCTCGCCGCA 
GTCGACGTGCCGCTATTGGCGGTCGCCGGGGCTGGGGACCGGCAGGACCCGTCCTGGGCCTGTCGCAAGTTG 
TTCGAGCAGTTCGCCTCGTCCGAGCGCGAATACCTGTTGCTCGGACGCGAGGCTGGCTACGCCGAGGACTAC 
GGGCATATCGAGATGCTGATCGGCAAGGCGGCCCAGCTAGAGGTCTGGCCCTTGGTGGAGCGCTGGCTGCGC 
CAGCGATCGCCGGCGGGCGACGAATCCGCGTGGAGTGAGGCGCTAGACGTATCGGAAGCCGGAATCAGCGGC 
TAA