ViewGene
Locus Name:
GeneID:
Location:

GeneID:1957
TrivialName: PA14_54580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54580
PAO1 Ortholog Locus:PA0751
Sequence Length:1038
Protein Length:345
Start: 4838092
Stop: 4839129
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04140.1|AE004510_4 (AE004510) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/345 (98%), Positives = 340/345 (98%)
Sequence:
ATGCCTGAGCGCGTCACCTGGAGGCTGTACTGGGCGACGCCGTTGGTCGGCGCCCTTGGCGGCTGGCTGGCA
AGCCTGGTCGGCTGGCCGCTGCCATGGATGATCGGCTCGCTGCTGGCGGTGATGCTGGTGCGCTGCCTGGCC
GACCTGCCGCTGGCCGAAGTGCCGGGGGCACGCAAGTGCGGGCAATGGATCGTCGGCATCGGCATCGGCCTG
CACTTCACTCCGGCAGTGATCGAGCAAGTGCTGGCGCACAGCGCGATCATCGTTTTCGGCGCCGTGGTCACC
ACGCTTTCCAGCGTACTGGCGATCGCCTTCATGCGCCGCAGCGGCGAGGACCGCGCCACCGCGTTCTTCGCC
AGCATGCCCGGCGGCGCCAGCGAGATGGTCAACCTCGGGCAGCGCCACGGCGCGGTGCTCAGCCGCGTCGCC
GCAGCGCAGAGCCTGCGCCTGTTGCTGGTGGTGCTGCTGGTGCCGGCGGCGTTCCAGTACCTGCTCGGCGGC
GGCCAGCCGGGCCCGCACCAGGCCGCGCCGGTGGACTGGCGCTGGCTGGCCCTGCTGTTCCCGGCCGGGGCG
CTGGTCGCGCTGGGCTGGCAGAAGTTGCGCCAACCCAATCCCTGGCTGCTCGGCCCGCTGCTGCTGGCGGCC
AGCGTCAGCCTCGGCTTCGACCTGCATATCGGCCTGCCGACCGGTTCCAGCGGCGTTGGCCAATGGCTGATC
GGCAGCGCCCTGGGTTGCCATTTCAACCGCAGTTTCTTCCGCAGCGCTCCGGCCTTCGTCAGTCGCACCCTG
GTCTGCACGCTATGGATGATGTTCGCCGCGGCGCTCGCCGCCGAGTTGCTCGGCTGGCTGACCACCCTCGAC
CACCAGTCGCTGATGCTCGGCATGATGCCCGGCGGCATCGCCGAGCTGAGCCTGACCGCCGAAGCCTTGCAG
CTCTCGGTGCCGCTGGTCACCGCCCTGCAGGTGCTGCGGCTATTGCTGGTGCTGTTCCTCGCCGAGCCGTGC
TTCCGCTACTGGAGGAAGCGCGCCGGCTGA
Translation:
MPERVTWRLYWATPLVGALGGWLASLVGWPLPWMIGSLLAVMLVRCLADLPLAEVPGARKCGQWIVGIGIGL
HFTPAVIEQVLAHSAIIVFGAVVTTLSSVLAIAFMRRSGEDRATAFFASMPGGASEMVNLGQRHGAVLSRVA
AAQSLRLLLVVLLVPAAFQYLLGGGQPGPHQAAPVDWRWLALLFPAGALVALGWQKLRQPNPWLLGPLLLAA
SVSLGFDLHIGLPTGSSGVGQWLIGSALGCHFNRSFFRSAPAFVSRTLVCTLWMMFAAALAAELLGWLTTLD
HQSLMLGMMPGGIAELSLTAEALQLSVPLVTALQVLRLLLVLFLAEPCFRYWRKRAG*
AnnotationID:1966GeneID:1957
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0751
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05145, COG3180
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam05145, AmoA, Putative ammonia monooxygenase.  Score: 305, 1e-83
COG3180, AbrB, Putative ammonia monooxygenase. Score: 285, 9e-78






   
Genomic Context:






   
Comment:


















    ReferenceID:3917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1957
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3419
                           PA0751_tr
                           translation of PA0751
                           345
                           98.55
                           98.55
                           0
                           1765.0
     

     
     
105397
                           gb|AAG04140.1|AE004510_4
                           (AE004510) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           345
                           98.55
                           98.55
                           0
                           1765.0
     

     
     
105399
                           gb|AAO57691.1|
                           (AE016871) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           346
                           66.47
                           78.03
                           3
                           1149.0
     

     
     
105398
                           gb|AAN67037.1|AE016332_7
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           353
                           66.00
                           77.62
                           10
                           1174.0
     

     
     
105400
                           emb|CAA74724.1|
                           (Y14338) ammonia monooxygenase [Pseudomonas putida]
                           522
                           36.01
                           45.40
                           190
                           885.0
     

     






      

          
GC ORFID: 44959How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0751Glimmer Score: 

          
Start: 115815Stop: 114778

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0751 translation of PA0751Homolog Bit Score 684.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2602 (ORF: BLASTX 454.0), t_PA0751 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGAGCGCGTCACCTGGAGGCTGTACTGGGCGACGCCGTTGGTCGGCGCCCTTGGCGGCTGGCTGGCA 
AGCCTGGTCGGCTGGCCGCTGCCATGGATGATCGGCTCGCTGCTGGCGGTGATGCTGGTGCGCTGCCTGGCC 
GACCTGCCGCTGGCCGAAGTGCCGGGGGCACGCAAGTGCGGGCAATGGATCGTCGGCATCGGCATCGGCCTG 
CACTTCACTCCGGCAGTGATCGAGCAAGTGCTGGCGCACAGCGCGATCATCGTTTTCGGCGCCGTGGTCACC 
ACGCTTTCCAGCGTACTGGCGATCGCCTTCATGCGCCGCAGCGGCGAGGACCGCGCCACCGCGTTCTTCGCC 
AGCATGCCCGGCGGCGCCAGCGAGATGGTCAACCTCGGGCAGCGCCACGGCGCGGTGCTCAGCCGCGTCGCC 
GCAGCGCAGAGCCTGCGCCTGTTGCTGGTGGTGCTGCTGGTGCCGGCGGCGTTCCAGTACCTGCTCGGCGGC 
GGCCAGCCGGGCCCGCACCAGGCCGCGCCGGTGGACTGGCGCTGGCTGGCCCTGCTGTTCCCGGCCGGGGCG 
CTGGTCGCGCTGGGCTGGCAGAAGTTGCGCCAACCCAATCCCTGGCTGCTCGGCCCGCTGCTGCTGGCGGCC 
AGCGTCAGCCTCGGCTTCGACCTGCATATCGGCCTGCCGACCGGTTCCAGCGGCGTTGGCCAATGGCTGATC 
GGCAGCGCCCTGGGTTGCCATTTCAACCGCAGTTTCTTCCGCAGCGCTCCGGCCTTCGTCAGTCGCACCCTG 
GTCTGCACGCTATGGATGATGTTCGCCGCGGCGCTCGCCGCCGAGTTGCTCGGCTGGCTGACCACCCTCGAC 
CACCAGTCGCTGATGCTCGGCATGATGCCCGGCGGCATCGCCGAGCTGAGCCTGACCGCCGAAGCCTTGCAG 
CTCTCGGTGCCGCTGGTCACCGCCCTGCAGGTGCTGCGGCTATTGCTGGTGCTGTTCCTCGCCGAGCCGTGC 
TTCCGCTACTGGAGGAAGCGCGCCGGCTGA