ViewGene
Locus Name:
GeneID:
Location:

GeneID:1954
TrivialName: PA14_37400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37400
PAO1 Ortholog Locus:PA2096
Sequence Length:1035
Protein Length:344
Start: 3328573
Stop: 3329607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05484.1|AE004637_4 (AE004637) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 342/343 (99%), Positives = 342/343 (99%)
Sequence:
ATGCCCACTCCGCCCTGGTCTCCCCGCCGCAGCGCCATCAGCGCGCACCTGCTGATCCAGTTCGGCATCGAC
CGCGGCCTCGGCCTGGAGCAGTGCCTGGCAGGTAGCGGCCTGGATATCCGCCTGCTCGGCGATCCCTCCGGG
GAAATCGACGCGGCCCAGGAACTGAGCGTCGTGCGCAACCTGGTCCGGCACCTGGGCGACGCCTGCGCACCG
GGCCTGGCGGCAGGCCTGCGCTATCACCTCAACGCCTACGGCATCTGGGGCTTCGCCCTGCTCAGCAGCCCG
ACCTTCCTCAGCGCCGCGCAACTGGGCCTGCGCTACCTCGACCTGACCTTCGCCTTCCATGGCATCCGCCTG
GAGGTACACGACGACGAAGCGCACCTGGTGCTCGACGACGCCGGCATTCCCGAGGACCTGCGGATTTTCCTC
CTCGAACGCGACGCCGGTGGCGTGCTGCGCATCCAGCGCGACCTCACCGGGCAGCGCCTGCCGATCCTCCGC
GCCGGCTTCCGCCGCCCACCGCCCGCCGATCCCGCGCCCTACGTGCGCGAGCTGGGCCTGTGCCCGGCGTTC
GGCCAGGCGGACAACCGGGTGGTCTTCGAACGGCGCTTCCTCGACCTCCCGCTGCCCGGCGCCAATCCAGAG
GTGGCGCGAGCCTGCGAGGAACAGTGCCGCGCCCTGCTCGCCCGCCGCCAGGTGCGCGGCGGTCTGGCCGGA
CGCATCCGCGACCGCTTGCTGAGGACGCCCGGCCACTTGCCGGACATGCAGACCCTGGCCATGGAACTGCAC
CTCACCGTGCGTACCCTGCGTCGCCGCCTGGACGACGAGGGCAGCAGCTACCGCCTGTTGCTCGACGAGGTG
CGCCAGGCCCTCGCCGAAGAGCTGCTGGCCACCGGCGCGATTCGCCTGGAGGAGATCGCCGAGCGCCTCGGC
TACGGCGAGGTATCCAACTTCATCCACGCCTTCAGGCGCTGGAAAGGCATGACGCCGCGCCAGTATCGCCAG
CGGCGACGACTCGACGCGATGCCCTGA
Translation:
MPTPPWSPRRSAISAHLLIQFGIDRGLGLEQCLAGSGLDIRLLGDPSGEIDAAQELSVVRNLVRHLGDACAP
GLAAGLRYHLNAYGIWGFALLSSPTFLSAAQLGLRYLDLTFAFHGIRLEVHDDEAHLVLDDAGIPEDLRIFL
LERDAGGVLRIQRDLTGQRLPILRAGFRRPPPADPAPYVRELGLCPAFGQADNRVVFERRFLDLPLPGANPE
VARACEEQCRALLARRQVRGGLAGRIRDRLLRTPGHLPDMQTLAMELHLTVRTLRRRLDDEGSSYRLLLDEV
RQALAEELLATGAIRLEEIAERLGYGEVSNFIHAFRRWKGMTPRQYRQRRRLDAMP*
AnnotationID:1963GeneID:1954
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:14
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2096
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK45705.1| (AE007015) transcriptional regulator, AraC family [Mycobacterium
           tuberculosis CDC1551]
          Length = 344

 Score =  191 bits (486), Expect = 4e-48
 Identities = 121/342 (35%), Positives = 177/342 (51%), Gaps = 12/342 (3%)






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  89.0% aligned
Score = 76.4 bits (187), Expect = 5e-15
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 70.6 bits (173), Expect = 3e-13
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3911




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32612




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1954_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1954
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3416
                           PA2096_tr
                           translation of PA2096
                           344
                           99.41
                           99.41
                           0
                           1766.0
     

     
     
105256
                           gb|AAG05484.1|AE004637_4
                           (AE004637) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           344
                           99.41
                           99.41
                           0
                           1766.0
     

     






      

          
GC ORFID: 44956How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2096Glimmer Score: 

          
Start: 1625341Stop: 1624307

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2096 translation of PA2096Homolog Bit Score 685.0

          
Other Homologs:  t_PA0831 (ORF: BLASTX 139.0), t_PA2096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACTCCGCCCTGGTCTCCCCGCCGCAGCGCCATCAGCGCGCACCTGCTGATCCAGTTCGGCATCGAC 
CGCGGCCTCGGCCTGGAGCAGTGCCTGGCAGGTAGCGGCCTGGATATCCGCCTGCTCGGCGATCCCTCCGGG 
GAAATCGACGCGGCCCAGGAACTGAGCGTCGTGCGCAACCTGGTCCGGCACCTGGGCGACGCCTGCGCACCG 
GGCCTGGCGGCAGGCCTGCGCTATCACCTCAACGCCTACGGCATCTGGGGCTTCGCCCTGCTCAGCAGCCCG 
ACCTTCCTCAGCGCCGCGCAACTGGGCCTGCGCTACCTCGACCTGACCTTCGCCTTCCATGGCATCCGCCTG 
GAGGTACACGACGACGAAGCGCACCTGGTGCTCGACGACGCCGGCATTCCCGAGGACCTGCGGATTTTCCTC 
CTCGAACGCGACGCCGGTGGCGTGCTGCGCATCCAGCGCGACCTCACCGGGCAGCGCCTGCCGATCCTCCGC 
GCCGGCTTCCGCCGCCCACCGCCCGCCGATCCCGCGCCCTACGTGCGCGAGCTGGGCCTGTGCCCGGCGTTC 
GGCCAGGCGGACAACCGGGTGGTCTTCGAACGGCGCTTCCTCGACCTCCCGCTGCCCGGCGCCAATCCAGAG 
GTGGCGCGAGCCTGCGAGGAACAGTGCCGCGCCCTGCTCGCCCGCCGCCAGGTGCGCGGCGGTCTGGCCGGA 
CGCATCCGCGACCGCTTGCTGAGGACGCCCGGCCACTTGCCGGACATGCAGACCCTGGCCATGGAACTGCAC 
CTCACCGTGCGTACCCTGCGTCGCCGCCTGGACGACGAGGGCAGCAGCTACCGCCTGTTGCTCGACGAGGTG 
CGCCAGGCCCTCGCCGAAGAGCTGCTGGCCACCGGCGCGATTCGCCTGGAGGAGATCGCCGAGCGCCTCGGC 
TACGGCGAGGTATCCAACTTCATCCACGCCTTCAGGCGCTGGAAAGGCATGACGCCGCGCCAGTATCGCCAG 
CGGCGACGACTCGACGCGATGCCCTGA