ViewGene
Locus Name:
GeneID:
Location:

GeneID:1953
TrivialName: PA14_07570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07570
PAO1 Ortholog Locus:PA0580
Sequence Length:1026
Protein Length:341
Start: 652136
Stop: 653161
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03969.1|AE004494_5 (AE004494) O-sialoglycoprotein endopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 340/341 (99%), Positives = 341/341 (100%)
Sequence:
ATGCGCGTGCTGGGACTGGAAACGTCCTGCGACGAAACCGGCGTCGCCCTTTACGACAGCGAACGCGGCCTG
CTGGCCGACGCGCTGTTCAGTCAGATCGACCTCCATCGCGTCTACGGCGGCGTCGTGCCCGAGCTGGCCTCG
CGCGACCACGTCAAGCGCATGCTGCCGCTGATCCGCCAGGTGCTCGACGAGTCCGGCTGTACGCCGGCGGAT
ATCGACGCGATCGCCTATACCGCCGGCCCCGGCCTGGTCGGCGCCCTGCTGGTGGGGGCTTCCTGTGCCCAG
GCGGTGGCCTTCGCCTGGGGCGTGCCGGCGGTCGGCGTGCACCACATGGAAGGGCACCTGCTGGCGCCGATG
CTGGAAGAGCAGCCGCCGCGGTTCCCGTTCGTCGCCTTGCTGGTTTCCGGCGGTCACACCCAGTTGGTGCGG
GTGGACGGCATCGGCCGCTACCAGTTGCTTGGCGAATCGGTGGACGATGCCGCCGGCGAAGCCTTCGACAAG
ACCGCCAAGCTGATCGGCCTGGGCTATCCCGGCGGTCCGGAAATCGCCCGCCTGGCGGAGCGCGGCACTCCT
GGCCGCTTCGTGTTCCCGCGGCCGATGACCGATCGCCCCGGCCTGGACTTCAGCTTCAGCGGGCTCAAGACC
TTTACCCTGAACACCTGGCAGCGTTGCGTCGAGGCCGGCGACGACAGCGAGCAGACCCGCTGCGACATCGCC
CTGGCGTTCCAGACCGCGGTGGTCGAGACTCTGCTGATCAAGTGCCGTCGCGCCTTGAAGCAGACCGGCCTG
AAGAACCTGGTGATCGCCGGCGGCGTCAGCGCCAACCAGGCGCTGCGCAGCGGCCTGGAAAAGATGCTCGGC
GAAATGAAGGGGCAGGTGTTCTACGCCCGCCCGCGCTTCTGCACCGACAATGGCGCGATGATCGCCTACGCC
GGCTGCCAGCGCCTGCTCGCCGGCCAGCATGACGGCCCGGCGATCAGCGTCCAGCCGCGCTGGCCGATGGAG
TCGCTGCCGGCGGTCTGA
Translation:
MRVLGLETSCDETGVALYDSERGLLADALFSQIDLHRVYGGVVPELASRDHVKRMLPLIRQVLDESGCTPAD
IDAIAYTAGPGLVGALLVGASCAQAVAFAWGVPAVGVHHMEGHLLAPMLEEQPPRFPFVALLVSGGHTQLVR
VDGIGRYQLLGESVDDAAGEAFDKTAKLIGLGYPGGPEIARLAERGTPGRFVFPRPMTDRPGLDFSFSGLKT
FTLNTWQRCVEAGDDSEQTRCDIALAFQTAVVETLLIKCRRALKQTGLKNLVIAGGVSANQALRSGLEKMLG
EMKGQVFYARPRFCTDNGAMIAYAGCQRLLAGQHDGPAISVQPRWPMESLPAV*
AnnotationID:1962GeneID:1953
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:20
Gene Name:gcp
Confidence Code:2
GeneProduct:O-sialoglycoprotein endopeptidase
Cell Localization:()
Synonyms:yjgD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0533,pfam00814
Secondary Functional Category(ies):
EC Number:3.4.24.57
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66021.1|AE016231_4 (AE016775) O-sialoglycoprotein endopeptidase [Pseudomonas putida
           KT2440]
          Length = 341

 Score =  601 bits (1550), Expect = e-171
 Identities = 294/339 (86%), Positives = 314/339 (92%)

>gb|AAO54082.1| (AE016857) O-sialoglycoprotein endopeptidase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 341

 Score =  573 bits (1478), Expect = e-163
 Identities = 281/338 (83%), Positives = 306/338 (90%)

>gb|AAN82260.1|AE016767_20 (AE016767) Probable O-sialoglycoprotein endopeptidase [Escherichia
           coli CFT073]
          Length = 337

 Score =  484 bits (1247), Expect = e-136
 Identities = 235/340 (69%), Positives = 281/340 (82%), Gaps = 4/340 (1%)








 
Structural Features:
COG0533, QRI7, Metal-dependent proteases with possible chaperone activity 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 342 residues,  99.4% aligned
Score =  469 bits (1209), Expect = 2e-133
Identities = 191/342 (55%), Positives = 241/342 (70%), Gaps = 3/342 (0%)

pfam00814, Peptidase_M22, Glycoprotease family.
CD-Length = 263 residues,  99.2% aligned
Score =  254 bits (651), Expect = 9e-69
Identities = 133/280 (47%), Positives = 171/280 (61%), Gaps = 20/280 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33870




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1953_cdd.html


    		




 
URL:

















    ReferenceID:35274




  
Author/Investigator(s):
        Abdullah KM, Lo RY, Mellors A.





  
Title:
        Cloning, nucleotide sequence, and expression of the Pasteurella haemolytica A1 glycoprotease gene.




  
PubMed:
        1885539


MedLine:
        




    
Source:
J Bacteriol. 1991 Sep;173(18):5597-603.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1885539









           
Homologs By Global Alignment 

           

       



     
Gene ID:1953
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3415
                           PA0580_tr
                           translation of PA0580
                           341
                           99.70
                           99.99
                           0
                           1769.0
     

     
     
105137
                           gb|AAG03969.1|AE004494_5
                           (AE004494) O-sialoglycoprotein endopeptidase [Pseudomonas aeruginosa PAO1]
                           341
                           99.70
                           99.99
                           0
                           1769.0
     

     
     
105138
                           gb|AAN66021.1|AE016231_4
                           (AE016775) O-sialoglycoprotein endopeptidase [Pseudomonas putida KT2440]
                           341
                           86.21
                           92.37
                           0
                           1550.0
     

     
     
105139
                           gb|AAO54082.1|
                           (AE016857) O-sialoglycoprotein endopeptidase [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           82.40
                           90.02
                           0
                           1478.0
     

     
     
105156
                           emb|CAC89500.1|
                           (AJ414144) putative glycoprotease [Yersinia pestis CO92]
                           341
                           69.50
                           80.64
                           4
                           1227.0
     

     






      

          
GC ORFID: 44955How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0580Glimmer Score: 

          
Start: 6453479Stop: 6454504

          
Length: 1026


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0580 translation of PA0580Homolog Bit Score 686.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6675 (ORF: BLASTX 570.0), t_PA0580 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGTGCTGGGACTGGAAACGTCCTGCGACGAAACCGGCGTCGCCCTTTACGACAGCGAACGCGGCCTG 
CTGGCCGACGCGCTGTTCAGTCAGATCGACCTCCATCGCGTCTACGGCGGCGTCGTGCCCGAGCTGGCCTCG 
CGCGACCACGTCAAGCGCATGCTGCCGCTGATCCGCCAGGTGCTCGACGAGTCCGGCTGTACGCCGGCGGAT 
ATCGACGCGATCGCCTATACCGCCGGCCCCGGCCTGGTCGGCGCCCTGCTGGTGGGGGCTTCCTGTGCCCAG 
GCGGTGGCCTTCGCCTGGGGCGTGCCGGCGGTCGGCGTGCACCACATGGAAGGGCACCTGCTGGCGCCGATG 
CTGGAAGAGCAGCCGCCGCGGTTCCCGTTCGTCGCCTTGCTGGTTTCCGGCGGTCACACCCAGTTGGTGCGG 
GTGGACGGCATCGGCCGCTACCAGTTGCTTGGCGAATCGGTGGACGATGCCGCCGGCGAAGCCTTCGACAAG 
ACCGCCAAGCTGATCGGCCTGGGCTATCCCGGCGGTCCGGAAATCGCCCGCCTGGCGGAGCGCGGCACTCCT 
GGCCGCTTCGTGTTCCCGCGGCCGATGACCGATCGCCCCGGCCTGGACTTCAGCTTCAGCGGGCTCAAGACC 
TTTACCCTGAACACCTGGCAGCGTTGCGTCGAGGCCGGCGACGACAGCGAGCAGACCCGCTGCGACATCGCC 
CTGGCGTTCCAGACCGCGGTGGTCGAGACTCTGCTGATCAAGTGCCGTCGCGCCTTGAAGCAGACCGGCCTG 
AAGAACCTGGTGATCGCCGGCGGCGTCAGCGCCAACCAGGCGCTGCGCAGCGGCCTGGAAAAGATGCTCGGC 
GAAATGAAGGGGCAGGTGTTCTACGCCCGCCCGCGCTTCTGCACCGACAATGGCGCGATGATCGCCTACGCC 
GGCTGCCAGCGCCTGCTCGCCGGCCAGCATGACGGCCCGGCGATCAGCGTCCAGCCGCGCTGGCCGATGGAG 
TCGCTGCCGGCGGTCTGA