ViewGene

Locus Name:
GeneID:
Location:

GeneID:1952
TrivialName: PA14_72970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72970
PAO1 Ortholog Locus:PA5531
Sequence Length:1029
Protein Length:342
Start: 6499163
Stop: 6498135
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08916.1|AE004965_8 (AE004965) TonB protein [Pseudomonas aeruginosa PAO1]
Identities = 334/342 (97%), Positives = 337/342 (98%)
Sequence:
ATGTCGCCACAGCCTTCACGGTCGCCTGACCGTTTTTCGCTGGCCGCGCTCGCCGAAGACCATCCCACCGCT
CCTGCCCAGGGAGACGAAAGCGAGTCCCTGCCATGCGTGAATGCCCAGCGCGGAGAGCCCAACCTGCGCGTG
GTGGACTGCTCCGGTGCGCGCCGCGACGAGGAAGTGGCGGTCGAGGAAGTGCTGATCCCCTACGCCCATGGC
AGCGATCCCGAAGACGTCCCCGGCGAGCCGCCCAAGTCGCGCTGGTGGTTGTCCTCCGGCGCGGCGGTGGCG
ATGCATGTGGCGATCATCGGTGCGCTGGTGTGGGTGATGCCGACCCCGGCCGAACTCAACCTTGGCCACGGC
GAACTGCCGAAGACCATGCAGGTGAATTTCGTCCAGCTCGAGAAGAAGGCCGAGCCGACCCCGCAGCCGCCG
GCTGCCGCGCCGGAACCGACGCCGCCGAAGATCGAGGAACCCAAGCCGGAGCCGCCGAAGCCGAAGCCGGTG
GAAAAACCCAAGCCCAAGCCGAAACCCAAGCCCAAACCGGTGGAAAACGCCATTCCCAAGGCCAAGCCGAAG
CCGGAACCCAAACCCAAGCCGGAACCCGAGCCGAGCACGGAAGCATCCAGCCAGCCCAGCCCGTCCAGCGCC
GCGCCGCCGCCCGCGCCTACCGTCGGGCAGAGCACGCCCGGCGCGCAGACTGCGCCCAGCGGCTCGCAAGGC
CCGGCCGGCCTGCCCAGCGGCAGCCTCAACGACAGCGACATCAAGCCGTTGGGCATGGCGCAACCGGTCTAT
CCGCGGATGGCCCAGGCACGGGGAATTCAGGGCCGGGTGAAGGTGCTGTTCACCATTACCACCGATGGCCGC
ATCGACGATATTCAGATACTCGAGTCGGTGCCGTCAGGCATGTTCGACCGTTCGGTGCGCCAGGCCATGGCC
AAGTGGCGTTTCGAGCCGCGTGTCAGCGGTGGCAAGATCGTCGCCCGCCAGGCGACCAAGATGTTCTTCTTC
AAGATCGAGAAGCGCCGCTGA
Translation:
MSPQPSRSPDRFSLAALAEDHPTAPAQGDESESLPCVNAQRGEPNLRVVDCSGARRDEEVAVEEVLIPYAHG
SDPEDVPGEPPKSRWWLSSGAAVAMHVAIIGALVWVMPTPAELNLGHGELPKTMQVNFVQLEKKAEPTPQPP
AAAPEPTPPKIEEPKPEPPKPKPVEKPKPKPKPKPKPVENAIPKAKPKPEPKPKPEPEPSTEASSQPSPSSA
APPPAPTVGQSTPGAQTAPSGSQGPAGLPSGSLNDSDIKPLGMAQPVYPRMAQARGIQGRVKVLFTITTDGR
IDDIQILESVPSGMFDRSVRQAMAKWRFEPRVSGGKIVARQATKMFFFKIEKRR*
AnnotationID:1961GeneID:1952
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 06:06:50
Gene Name:tonB
Confidence Code:1
GeneProduct:periplasmic protein tonB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0810,pfam03544
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes 
[Cell envelope biogenesis, outer membrane]
CD-Length = 244 residues,  85.2% aligned
Score = 84.8 bits (209), Expect = 1e-17
Identities = 78/213 (36%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

pfam03544, TonB, Gram-negative bacterial tonB protein.
CD-Length = 35 residues, 100.0% aligned
Score = 53.9 bits (130), Expect = 3e-08
Identities = 15/35 (42%), Positives = 24/35 (68%)

Genomic Context:
Comment:
ReferenceID:3907
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21053
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33315
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1952_cdd.html
URL:
ReferenceID:35616
Author/Investigator(s): Poole K, Zhao Q, Neshat S, Heinrichs DE, Dean CR.
Title: The Pseudomonas aeruginosa tonB gene encodes a novel TonB protein.
PubMed: 8704984
MedLine:
Source:
Microbiology. 1996 Jun;142 ( Pt 6):1449-58.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8704984
Homologs By Global Alignment
Gene ID:1952

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3414 PA5531_tr translation of PA5531 342 97.66 98.53 0 1769.0
105132 gb|AAG08916.1|AE004965_8 (AE004965) TonB protein [Pseudomonas aeruginosa PAO1] 342 97.66 98.53 0 1769.0
105133 gb|AAB18654.1| (U23764) TonB [Pseudomonas aeruginosa] 342 97.36 98.24 0 1761.0
105136 gb|AAK38176.1|AF251127_1 (AF251127) TonB [Salmonella typhi] 356 28.37 39.04 133 379.0
105134 gb|AAO69276.1| (AE016839) TonB protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] 359 28.13 38.71 134 376.0
GC ORFID: 44954How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5531Glimmer Score:
Start: 5762852Stop: 5761824
Length: 1029
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5531 translation of PA5531Homolog Bit Score 686.0
Other Homologs: t_PA5531 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCCACAGCCTTCACGGTCGCCTGACCGTTTTTCGCTGGCCGCGCTCGCCGAAGACCATCCCACCGCT
CCTGCCCAGGGAGACGAAAGCGAGTCCCTGCCATGCGTGAATGCCCAGCGCGGAGAGCCCAACCTGCGCGTG
GTGGACTGCTCCGGTGCGCGCCGCGACGAGGAAGTGGCGGTCGAGGAAGTGCTGATCCCCTACGCCCATGGC
AGCGATCCCGAAGACGTCCCCGGCGAGCCGCCCAAGTCGCGCTGGTGGTTGTCCTCCGGCGCGGCGGTGGCG
ATGCATGTGGCGATCATCGGTGCGCTGGTGTGGGTGATGCCGACCCCGGCCGAACTCAACCTTGGCCACGGC
GAACTGCCGAAGACCATGCAGGTGAATTTCGTCCAGCTCGAGAAGAAGGCCGAGCCGACCCCGCAGCCGCCG
GCTGCCGCGCCGGAACCGACGCCGCCGAAGATCGAGGAACCCAAGCCGGAGCCGCCGAAGCCGAAGCCGGTG
GAAAAACCCAAGCCCAAGCCGAAACCCAAGCCCAAACCGGTGGAAAACGCCATTCCCAAGGCCAAGCCGAAG
CCGGAACCCAAACCCAAGCCGGAACCCGAGCCGAGCACGGAAGCATCCAGCCAGCCCAGCCCGTCCAGCGCC
GCGCCGCCGCCCGCGCCTACCGTCGGGCAGAGCACGCCCGGCGCGCAGACTGCGCCCAGCGGCTCGCAAGGC
CCGGCCGGCCTGCCCAGCGGCAGCCTCAACGACAGCGACATCAAGCCGTTGGGCATGGCGCAACCGGTCTAT
CCGCGGATGGCCCAGGCACGGGGAATTCAGGGCCGGGTGAAGGTGCTGTTCACCATTACCACCGATGGCCGC
ATCGACGATATTCAGATACTCGAGTCGGTGCCGTCAGGCATGTTCGACCGTTCGGTGCGCCAGGCCATGGCC
AAGTGGCGTTTCGAGCCGCGTGTCAGCGGTGGCAAGATCGTCGCCCGCCAGGCGACCAAGATGTTCTTCTTC
AAGATCGAGAAGCGCCGCTGA