ViewGene
Locus Name:
GeneID:
Location:

GeneID:1951
TrivialName: PA14_62110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62110
PAO1 Ortholog Locus:PA4692
Sequence Length:1014
Protein Length:337
Start: 5543356
Stop: 5542343
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08078.1|AE004883_2 (AE004883) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 334/337 (99%), Positives = 335/337 (99%)
Sequence:
ATGCTGATCAAGATTCCCTCCCGTTCCGACTGTTCCGAGTCGGAAGTCACGTCCGAAACCCTCTACCTGTCC
CGTCGGCGTCTGCTCGGTGCTTCCTTCGCCGGATTGGCGCTGGCCAGCGGCCTGCCGCGCCTGGGCTTTGCC
GACGAACAGCGCTATGCCGGCGTCGAGCCGGTGCCGGCGCCGGGCTGGTTCGCCGAAAAGCTACCGCAGACC
CGCTGGCAGGCGGTGGATGTCCAGGGGGAGGCGATCACGCCATTCAAGGACGCCACCCACTACAACAATTTC
TACGAATTCGGGCCGAACAAGGGCGACCCGGCGGAAAACGCCTCGGCCCTGAAGACCGAGCCCTGGTCGGTG
GTGATCGACGGCGAGGTCGGCAAGCCGGGTACCTATGCCCTCGAGGACTTCGTCAAACCCTACCAACTGGAA
GAGCGCATCTATCGGCTGCGCTGCGTGGAAGCCTGGTCGATGGTGATCCCTTGGTTGGGCTTTCCCCTGGCG
GACCTGCTCAAGCGGGTCGAACCCAATGGGCAGGCGAAGTTCGTCCGTTTCGAAACCCTGCAGCGTCCGGAA
CAGATGGTCGGCCAACGCTCCGGTTTCTCGGTGATCGACTGGCCTTATATGGAAGGCTTGCGCATGGACGAG
GCGATGCATCCCCTGGCAATTCTGGCGGTGGGCATGTACGGGCGGCTGTTGCCCAACCAGAATGGCGCGCCG
TTGCGCCTGGTGGTGCCGTGGAAGTATGGCTTCAAGAGCATCAAGTCCATCGTGCGTATCAGTCTGGTCCGT
GAGCAGCCGAAGACCACCTGGGAAAGCATTGCCGCCAACGAGTACGGGTTCTATGCCAACGTCAATCCGCAG
GTCGACCACCCGCGATGGTCCCAGGCTCGCGAGCGGCGCCTGCCCAGTGGCTTGTTCAGCCCCAATGTACGG
GATACGCAGATGTTCAATGGCTACGGGAGCGAGGTCGCTTCCCTTTATAGCGGCATGGATCTGAGGAAGTAC
TACTGA
Translation:
MLIKIPSRSDCSESEVTSETLYLSRRRLLGASFAGLALASGLPRLGFADEQRYAGVEPVPAPGWFAEKLPQT
RWQAVDVQGEAITPFKDATHYNNFYEFGPNKGDPAENASALKTEPWSVVIDGEVGKPGTYALEDFVKPYQLE
ERIYRLRCVEAWSMVIPWLGFPLADLLKRVEPNGQAKFVRFETLQRPEQMVGQRSGFSVIDWPYMEGLRMDE
AMHPLAILAVGMYGRLLPNQNGAPLRLVVPWKYGFKSIKSIVRISLVREQPKTTWESIAANEYGFYANVNPQ
VDHPRWSQARERRLPSGLFSPNVRDTQMFNGYGSEVASLYSGMDLRKYY*
AnnotationID:1960GeneID:1951
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 09:09:48
Gene Name:
Confidence Code:3
GeneProduct:putative oxidase
Cell Localization:()
Synonyms:PA4692
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2041
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16690.1| (AL646073) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 331

 Score =  355 bits (910), Expect = 3e-97
 Identities = 186/334 (55%), Positives = 229/334 (68%), Gaps = 21/334 (6%)

>gb|AAL53547.1| (AE009669) NITRATE REDUCTASE [Brucella melitensis 16M]
          Length = 319

 Score =  340 bits (871), Expect = 9e-93
 Identities = 173/323 (53%), Positives = 215/323 (66%), Gaps = 23/323 (7%)






 
Structural Features:
COG2041, COG2041, Sulfite oxidase and related enzymes 
CD-Length = 271 residues, 100.0% aligned
Score =  250 bits (639), Expect = 2e-67
Identities = 122/289 (42%), Positives = 147/289 (50%), Gaps = 19/289 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21051




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37603




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1951_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1951
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3413
                           PA4692_tr
                           translation of PA4692
                           337
                           99.10
                           99.40
                           0
                           1771.0
     

     
     
105100
                           gb|AAG08078.1|AE004883_2
                           (AE004883) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           337
                           99.10
                           99.40
                           0
                           1771.0
     

     
     
105102
                           gb|AAO54519.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           338
                           76.92
                           87.86
                           2
                           1394.0
     

     
     
105101
                           gb|AAN70249.1|AE016665_2
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           341
                           76.24
                           84.16
                           4
                           1399.0
     

     
     
105105
                           emb|CAE44808.1|
                           (BX640412) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           339
                           56.63
                           69.91
                           22
                           946.0
     

     






      

          
GC ORFID: 44953How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4692Glimmer Score: 

          
Start: 4807036Stop: 4806023

          
Length: 1014


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4692 translation of PA4692Homolog Bit Score 686.0

          
Other Homologs:  psyr_15may02_Scaffold19_revised_gene2877 (ORF: BLASTX 552.0), t_PA4692 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCAAGATTCCCTCCCGTTCCGACTGTTCCGAGTCGGAAGTCACGTCCGAAACCCTCTACCTGTCC 
CGTCGGCGTCTGCTCGGTGCTTCCTTCGCCGGATTGGCGCTGGCCAGCGGCCTGCCGCGCCTGGGCTTTGCC 
GACGAACAGCGCTATGCCGGCGTCGAGCCGGTGCCGGCGCCGGGCTGGTTCGCCGAAAAGCTACCGCAGACC 
CGCTGGCAGGCGGTGGATGTCCAGGGGGAGGCGATCACGCCATTCAAGGACGCCACCCACTACAACAATTTC 
TACGAATTCGGGCCGAACAAGGGCGACCCGGCGGAAAACGCCTCGGCCCTGAAGACCGAGCCCTGGTCGGTG 
GTGATCGACGGCGAGGTCGGCAAGCCGGGTACCTATGCCCTCGAGGACTTCGTCAAACCCTACCAACTGGAA 
GAGCGCATCTATCGGCTGCGCTGCGTGGAAGCCTGGTCGATGGTGATCCCTTGGTTGGGCTTTCCCCTGGCG 
GACCTGCTCAAGCGGGTCGAACCCAATGGGCAGGCGAAGTTCGTCCGTTTCGAAACCCTGCAGCGTCCGGAA 
CAGATGGTCGGCCAACGCTCCGGTTTCTCGGTGATCGACTGGCCTTATATGGAAGGCTTGCGCATGGACGAG 
GCGATGCATCCCCTGGCAATTCTGGCGGTGGGCATGTACGGGCGGCTGTTGCCCAACCAGAATGGCGCGCCG 
TTGCGCCTGGTGGTGCCGTGGAAGTATGGCTTCAAGAGCATCAAGTCCATCGTGCGTATCAGTCTGGTCCGT 
GAGCAGCCGAAGACCACCTGGGAAAGCATTGCCGCCAACGAGTACGGGTTCTATGCCAACGTCAATCCGCAG 
GTCGACCACCCGCGATGGTCCCAGGCTCGCGAGCGGCGCCTGCCCAGTGGCTTGTTCAGCCCCAATGTACGG 
GATACGCAGATGTTCAATGGCTACGGGAGCGAGGTCGCTTCCCTTTATAGCGGCATGGATCTGAGGAAGTAC 
TACTGA