ViewGene
Locus Name:
GeneID:
Location:

GeneID:1950
TrivialName: PA14_12080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12080
PAO1 Ortholog Locus:PA4001
Sequence Length:1023
Protein Length:340
Start: 1043998
Stop: 1045020
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07388.1|AE004817_12 (AE004817) soluble lytic transglycosylase B [Pseudomonas aeruginosa PAO1]
Identities = 340/340 (100%), Positives = 340/340 (100%)
Sequence:
GTGAAGAACGCAATGCAAGTACTGCGTACATGGGCGGCCAGGGGCGTCCAATGGGTCGGCGTAGCCGGCGTC
ATTGGCCTGTCCGGGGCGGCCCAGGCGGGGGACTACGACGGCTCGCCGCAAGTGGCCGAGTTCGTCAGCGAA
ATGACCCGCGACTACGGCTTCGCCGGAGAGCAGCTGATGGGGCTGTTCCGCGACGTGAACCGCAAGCAGTCG
ATCCTCGATGCGATCTCGCGCCCGGCCGAGCGGGTCAAGCAGTGGAAGGAATACCGGCCGATCTTCATCAGC
GACGCGCGCATCAGTCGTGGTGTCGACTTCTGGAACAAGCATGCCGAAGACCTGGCGCGGGCAGAGAAGGAA
TACGGCGTGCCGGCCGAGATCATCGTCTCGATCATCGGCGTGGAAACCTTCTTCGGCCGCAACACCGGCAGC
TACCGGGTGATGGACGCGCTGTCCACCCTCGGCTTCGACTACCCGCCGCGGGCCGACTTCTTCCGCAAGGAG
TTGCGCGAGTTCCTCCTGCTCGCCCGCGAACAGCAGGTCGACCCGCTCAGCCTGACCGGCTCCTACGCCGGC
GCCATGGGCCTGCCGCAATTCATGCCGAGCAGCTTCCGCGCCTACGCGGTGGACTTCGACGGCGATGGCCAC
ATCAATATCTGGAGCGACCCGACCGACGCCATCGGTAGCGTCGCCAGCTACTTCAAGCAGCACGGCTGGGTC
ACCGGCGAGCCGGTGGTCTCGGTGGCCGAGATCAACGACGAGAGCGCCGAGAGCGCGGTGACCAGGGGCGTC
GACCCGACCATGAGCCTGGGCGAGCTGCGTGCCCGCGGCTGGCGCACCCATGATGCGCTGCGCGACGACCAG
AAGGTCACGGCGATGCGTTTCGTCGGCGACAAGGGCATCGAGTATTGGGTCGGTTTGCCGAACTTCTACGTG
ATCACCCGCTATAATCGCAGCGCCATGTATGCCATGGCGGTTTATCAGCTGGCGGGCGAGATTGCCCGCGCG
CGAGGTGCCCATTGA
Translation:
MKNAMQVLRTWAARGVQWVGVAGVIGLSGAAQAGDYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQS
ILDAISRPAERVKQWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGS
YRVMDALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFRAYAVDFDGDGH
INIWSDPTDAIGSVASYFKQHGWVTGEPVVSVAEINDESAESAVTRGVDPTMSLGELRARGWRTHDALRDDQ
KVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMAVYQLAGEIARARGAH*
AnnotationID:1959GeneID:1950
AnnotatorUID: urbach
Modification Date/Time: 2004-09-13 16:04:16
Gene Name:sltB1
Confidence Code:1
GeneProduct:soluble lytic transglycosylase B
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:envelope biogenesis
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2951
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07388.1|AE004817_12 (AE004817) soluble lytic transglycosylase B [Pseudomonas aeruginosa PAO1]
Length = 340
Score =  687 bits (1772), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)






 
Structural Features:
gnl|CDD|12298 COG2951, MltB, Membrane-bound lytic murein transglycosylase B
[Cell envelope biogenesis, outer membrane]
Length = 343
Score =  316 bits (812), Expect = 4e-87
Identities = 127/341 (37%), Positives = 176/341 (51%), Gaps = 5/341 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34284




  
Author/Investigator(s):
        Blackburn NT, Clarke AJ.





  
Title:
        Characterization of soluble and membrane-bound family 3 lytic transglycosylases from Pseudomonas aeruginosa.




  
PubMed:
        11790124


MedLine:
        




    
Source:
Biochemistry. 2002 Jan 22;41(3):1001-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11790124









           
Homologs By Global Alignment 

           

       



     
Gene ID:1950
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3411
                           PA4001_tr
                           translation of PA4001
                           340
                           99.99
                           99.99
                           0
                           1771.0
     

     
     
105070
                           gb|AAG07388.1|AE004817_12
                           (AE004817) soluble lytic transglycosylase B [Pseudomonas aeruginosa PAO1]
                           340
                           99.70
                           99.99
                           0
                           1768.0
     

     
     
105071
                           gb|AAD32232.1|AF147448_3
                           (AF147448) membrane-bound lytic transglycosylase [Pseudomonas aeruginosa]
                           340
                           98.82
                           98.82
                           4
                           1752.0
     

     
     
105072
                           gb|AAO58252.1|
                           (AE016873) membrane-bound lytic murein transglycosylase B [Pseudomonas syringae pv. tomato str. DC3000]
                           340
                           73.52
                           82.64
                           5
                           1321.0
     

     
     
105073
                           gb|AAN70374.1|AE016679_6
                           (AE016792) membrane-bound lytic murein transglycosylase B [Pseudomonas putida KT2440]
                           348
                           69.54
                           80.74
                           8
                           1306.0
     

     






      

          
GC ORFID: 44952How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4001Glimmer Score: 

          
Start: 3909940Stop: 3908918

          
Length: 1023


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4001 translation of PA4001Homolog Bit Score 686.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5328 (ORF: BLASTX 513.0), t_PA4444 (ORF: BLASTX 275.0), t_PA4001 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGAACGCAATGCAAGTACTGCGTACATGGGCGGCCAGGGGCGTCCAATGGGTCGGCGTAGCCGGCGTC 
ATTGGCCTGTCCGGGGCGGCCCAGGCGGGGGACTACGACGGCTCGCCGCAAGTGGCCGAGTTCGTCAGCGAA 
ATGACCCGCGACTACGGCTTCGCCGGAGAGCAGCTGATGGGGCTGTTCCGCGACGTGAACCGCAAGCAGTCG 
ATCCTCGATGCGATCTCGCGCCCGGCCGAGCGGGTCAAGCAGTGGAAGGAATACCGGCCGATCTTCATCAGC 
GACGCGCGCATCAGTCGTGGTGTCGACTTCTGGAACAAGCATGCCGAAGACCTGGCGCGGGCAGAGAAGGAA 
TACGGCGTGCCGGCCGAGATCATCGTCTCGATCATCGGCGTGGAAACCTTCTTCGGCCGCAACACCGGCAGC 
TACCGGGTGATGGACGCGCTGTCCACCCTCGGCTTCGACTACCCGCCGCGGGCCGACTTCTTCCGCAAGGAG 
TTGCGCGAGTTCCTCCTGCTCGCCCGCGAACAGCAGGTCGACCCGCTCAGCCTGACCGGCTCCTACGCCGGC 
GCCATGGGCCTGCCGCAATTCATGCCGAGCAGCTTCCGCGCCTACGCGGTGGACTTCGACGGCGATGGCCAC 
ATCAATATCTGGAGCGACCCGACCGACGCCATCGGTAGCGTCGCCAGCTACTTCAAGCAGCACGGCTGGGTC 
ACCGGCGAGCCGGTGGTCTCGGTGGCCGAGATCAACGACGAGAGCGCCGAGAGCGCGGTGACCAGGGGCGTC 
GACCCGACCATGAGCCTGGGCGAGCTGCGTGCCCGCGGCTGGCGCACCCATGATGCGCTGCGCGACGACCAG 
AAGGTCACGGCGATGCGTTTCGTCGGCGACAAGGGCATCGAGTATTGGGTCGGTTTGCCGAACTTCTACGTG 
ATCACCCGCTATAATCGCAGCGCCATGTATGCCATGGCGGTTTATCAGCTGGCGGGCGAGATTGCCCGCGCG 
CGAGGTGCCCATTGA