ViewGene

Locus Name:
GeneID:
Location:

GeneID:195
TrivialName: PA14_33900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33900
PAO1 Ortholog Locus:PA2378
Sequence Length:2316
Protein Length:771
Start: 3011563
Stop: 3013878
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05766.1|AE004664_3 (AE004664) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 769/771 (99%), Positives = 770/771 (99%)
Sequence:
ATGAAGCGCTCGTTCCCCGACGATCTGGTCATCGGCAATCTCAGCCGCCGCGGTTTCCTCAAGGGCGTCGGC
GCCACCGGCGTGCTGCTGGTGGCTGCCAACTGGGGCTGGCGCGACGCCCTGGCCGCCGAAAAGAAGGCCTTC
GGCGCCGACGCCATGCCCCATGGCTGGGTGGACAACCCGAAGATCTACGTGAGCATCGACCGGGACGGCACG
GTCGGCATCGTCTGCAACCGCTCGGAAATGGGCCAGGGCGTGCGCACCAGCCTGGCGATGGTGGTGGCCGAC
GAGCTGGAGGCCGACTGGAGCCGGGTCAAGGTGATCCAGGCGCCCGGCGACGAAGCGCGCTACGGCAACCAG
GACACCGATGGCTCGCGCAGCATGCGCCATTGGTTCGAACCCATGCGCCGCTGCGGTGCGGCGGCGCGACAG
ATGCTCGAACAGGCCGCGGCCAACCAGTGGAAGGTTCCGCTGGGCGAGTGCCGCGCCGAACAGAACAAGGTG
CTGCATGCGCCCAGCGGCCGTTCGCTGTCCTTCGGCGAACTGGCCGAGGCCGCCGCGGGCCTCGAAGTGCCG
GCGCGCGACAAGCTGCTGCTGAAGAAGCCCGAGCAGTTCCGCTACATCGGCAAGGACGTGGCGCGCGCCATC
GACGGCGCCGATATCGTCAATGGCCGCGCCGGCTTCGGCTTCGACGCGCGCTTCGACGACATGCTCTACGCC
GTGGTCGCCCGGCCGCCGGTCTACGGCGGCAAGCTCAAGCGCTACGACGCCGCCGCGGCGCTGAAGGTGCCG
GGGGTGGTCAAGGTGATCGAGATCGAGGGCCGGCCGATCCCGTCCGAGTTCCAGCCGCTGGGCGGGGTCGCC
GTGGTGGCGCAGAACACCTGGGCGGCGATCAAGGGGCGCGAGGCGCTGGTGGTCGAGTGGGACGCCGGGGTC
AACGGCGGCTACGACTCGGTGGCCTACCGCAAGCAACTGGAAGAGGCCGCGCGCAAGCCGGGCAAGGTGGTG
CGCGACAGCGGCGATGCCGCGGCGCTATTCGCCAAGGGCGGGGATATCGTCGAGGCCGAGTACTACCTGCCG
CACCTGGCCCAGGCGCCGATGGAACCGCCGGTCTCCACCGCCTGGTACAAGGACGGCGCCTGCGAGGTCTGG
GTCCCGACCCAGGCGCCGCAAGTGACCCGCGAGCGCATCGCCGAGCGCCTGAAACTGCCGTTCGACAAGGTC
ACGGTCAACGTGACCCTGCTCGGCGGCGGTTTCGGCCGCAAGTCCAAGCCCGACTTCGTGCTGGAAGCGGCG
ATCCTGGCCAAGGCGTTCCCCGGTCGCCACCTGCGCGTGCAGTGGACCCGCGAGGACGACCTGCATTTCTCC
TATTTCCACACGGTCTCGGTGGAGCGCCTGCAGGCCGTGCTTGGCGCCGACGGGCTGCCGCAGGCCTGGCTG
CATCGCTCGGTGGCGCCGAGCATCACCGCACTGTTCGGCCCGGACAGCAAGCACCAGGGCGCCTTCGAACTG
GGCATGGGCCTGACCAACCTGCCGTTCGCCATCCCCAACGTGCGCCTGGAGAACCCCGAGGCCCCGGCGCAC
ACCCGGGTCGGCTGGTTCCGCTCGGTCTCCAACATCCCCCACGCCTTCGCCATCCAGAGCTTCGTCGGCGAA
CTGGCGGCGAAGGCCGGCCAGGACCCGAAGGACTACCTGCTCAAGCTGCTCGGCCCGGCGCGGCGGATCGAC
ACCGCCGAACTCGGCGACAGCTGGAACTACGGCGAGTCGCCGGAGCGCTACCCGCTGGATGTCGGCCGCCTG
CGCGGGGTGATCGAGGAGGCGGCGCGCCAGTCCGGCTGGGGCGGCGAGCTGCCCAGGGGCAGGGCGCGGGGA
ATCGCCGCGCACTACAGCTTCGTCACCTACGTGGCGGTGGTGATCGAGGTGGAGGTGAAGGACGACGGCGCG
CTGCTGGTGCACAAGGCCACCATCGCCGCCGACTGCGGTCCGCAGATCAACCCCGAGCGCATCCGCTCGCAG
CTCGAAGGCGCCTGCGTGATGGGCCTGGGCCTGGCGGCGCTGGGCGAGATCAGCTTCAAGGATGGCAAGGTC
CAGCAGGACAATTTCCACCAGTACGAGCTGGCGCGCATGCCGCTGGCGCCCAAGGCGGTGTCGGTGCATCTG
CTCAAGCCGGATGGCGACCTGCCGTTGGGCGGGGTCGGCGAGCCCGGCGTGCCGCCGATAGCGCCGGCGCTG
TGCAACGCGATCTTCGCCGCCACCGGCAAGCGCATCCGCGAGTTGCCGATCCGCAATCAGTTGCAGGGGTGG
CGGAAGGCCTAG
Translation:
MKRSFPDDLVIGNLSRRGFLKGVGATGVLLVAANWGWRDALAAEKKAFGADAMPHGWVDNPKIYVSIDRDGT
VGIVCNRSEMGQGVRTSLAMVVADELEADWSRVKVIQAPGDEARYGNQDTDGSRSMRHWFEPMRRCGAAARQ
MLEQAAANQWKVPLGECRAEQNKVLHAPSGRSLSFGELAEAAAGLEVPARDKLLLKKPEQFRYIGKDVARAI
DGADIVNGRAGFGFDARFDDMLYAVVARPPVYGGKLKRYDAAAALKVPGVVKVIEIEGRPIPSEFQPLGGVA
VVAQNTWAAIKGREALVVEWDAGVNGGYDSVAYRKQLEEAARKPGKVVRDSGDAAALFAKGGDIVEAEYYLP
HLAQAPMEPPVSTAWYKDGACEVWVPTQAPQVTRERIAERLKLPFDKVTVNVTLLGGGFGRKSKPDFVLEAA
ILAKAFPGRHLRVQWTREDDLHFSYFHTVSVERLQAVLGADGLPQAWLHRSVAPSITALFGPDSKHQGAFEL
GMGLTNLPFAIPNVRLENPEAPAHTRVGWFRSVSNIPHAFAIQSFVGELAAKAGQDPKDYLLKLLGPARRID
TAELGDSWNYGESPERYPLDVGRLRGVIEEAARQSGWGGELPRGRARGIAAHYSFVTYVAVVIEVEVKDDGA
LLVHKATIAADCGPQINPERIRSQLEGACVMGLGLAALGEISFKDGKVQQDNFHQYELARMPLAPKAVSVHL
LKPDGDLPLGGVGEPGVPPIAPALCNAIFAATGKRIRELPIRNQLQGWRKA*
AnnotationID:205GeneID:195
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:15
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA2378
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1529
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE31211.1| (BX640439) putative aldehyde dehydrogenase [Bordetella
           bronchiseptica]
          Length = 783

 Score =  917 bits (2371), Expect = 0.0
 Identities = 466/765 (60%), Positives = 556/765 (72%), Gaps = 4/765 (0%)

>gb|AAN56057.1|AE015741_2 (AE015741) isoquinoline 1-oxidoreductase, beta subunit, putative
           [Shewanella oneidensis MR-1]
          Length = 748

 Score =  612 bits (1579), Expect = e-174
 Identities = 339/760 (44%), Positives = 469/760 (61%), Gaps = 23/760 (3%)
Structural Features:
COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit 
CoxL/CutL homologs 
[Energy production and conversion]
CD-Length = 731 residues,  99.6% aligned
Score =  356 bits (915), Expect = 5e-99
Identities = 207/788 (26%), Positives = 290/788 (36%), Gaps = 88/788 (11%)

Genomic Context:
Comment:
ReferenceID:393
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17535
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32920
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:195_cdd.html
URL:
Homologs By Global Alignment
Gene ID:195

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
335 PA2378_tr translation of PA2378 771 99.74 99.87 0 4024.0
21310 gb|AAG05766.1|AE004664_3 (AE004664) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1] 771 99.74 99.87 0 4024.0
21311 emb|CAE31211.1| (BX640439) putative aldehyde dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 787 59.21 70.64 20 2369.0
21312 emb|CAE40113.1| (BX640425) putative aldehyde dehydrogenase [Bordetella parapertussis] 787 59.08 70.64 20 2365.0
21313 dbj|BAC51484.1| (AP005957) blr6219 [Bradyrhizobium japonicum USDA 110] 781 55.69 68.75 21 2161.0
GC ORFID: 43197How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2378Glimmer Score:
Start: 1942353Stop: 1940038
Length: 2316
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2378 translation of PA2378Homolog Bit Score 1554.0
Other Homologs: t_PA1880 (ORF: BLASTX 469.0), t_PA2378 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCGCTCGTTCCCCGACGATCTGGTCATCGGCAATCTCAGCCGCCGCGGTTTCCTCAAGGGCGTCGGC
GCCACCGGCGTGCTGCTGGTGGCTGCCAACTGGGGCTGGCGCGACGCCCTGGCCGCCGAAAAGAAGGCCTTC
GGCGCCGACGCCATGCCCCATGGCTGGGTGGACAACCCGAAGATCTACGTGAGCATCGACCGGGACGGCACG
GTCGGCATCGTCTGCAACCGCTCGGAAATGGGCCAGGGCGTGCGCACCAGCCTGGCGATGGTGGTGGCCGAC
GAGCTGGAGGCCGACTGGAGCCGGGTCAAGGTGATCCAGGCGCCCGGCGACGAAGCGCGCTACGGCAACCAG
GACACCGATGGCTCGCGCAGCATGCGCCATTGGTTCGAACCCATGCGCCGCTGCGGTGCGGCGGCGCGACAG
ATGCTCGAACAGGCCGCGGCCAACCAGTGGAAGGTTCCGCTGGGCGAGTGCCGCGCCGAACAGAACAAGGTG
CTGCATGCGCCCAGCGGCCGTTCGCTGTCCTTCGGCGAACTGGCCGAGGCCGCCGCGGGCCTCGAAGTGCCG
GCGCGCGACAAGCTGCTGCTGAAGAAGCCCGAGCAGTTCCGCTACATCGGCAAGGACGTGGCGCGCGCCATC
GACGGCGCCGATATCGTCAATGGCCGCGCCGGCTTCGGCTTCGACGCGCGCTTCGACGACATGCTCTACGCC
GTGGTCGCCCGGCCGCCGGTCTACGGCGGCAAGCTCAAGCGCTACGACGCCGCCGCGGCGCTGAAGGTGCCG
GGGGTGGTCAAGGTGATCGAGATCGAGGGCCGGCCGATCCCGTCCGAGTTCCAGCCGCTGGGCGGGGTCGCC
GTGGTGGCGCAGAACACCTGGGCGGCGATCAAGGGGCGCGAGGCGCTGGTGGTCGAGTGGGACGCCGGGGTC
AACGGCGGCTACGACTCGGTGGCCTACCGCAAGCAACTGGAAGAGGCCGCGCGCAAGCCGGGCAAGGTGGTG
CGCGACAGCGGCGATGCCGCGGCGCTATTCGCCAAGGGCGGGGATATCGTCGAGGCCGAGTACTACCTGCCG
CACCTGGCCCAGGCGCCGATGGAACCGCCGGTCTCCACCGCCTGGTACAAGGACGGCGCCTGCGAGGTCTGG
GTCCCGACCCAGGCGCCGCAAGTGACCCGCGAGCGCATCGCCGAGCGCCTGAAACTGCCGTTCGACAAGGTC
ACGGTCAACGTGACCCTGCTCGGCGGCGGTTTCGGCCGCAAGTCCAAGCCCGACTTCGTGCTGGAAGCGGCG
ATCCTGGCCAAGGCGTTCCCCGGTCGCCACCTGCGCGTGCAGTGGACCCGCGAGGACGACCTGCATTTCTCC
TATTTCCACACGGTCTCGGTGGAGCGCCTGCAGGCCGTGCTTGGCGCCGACGGGCTGCCGCAGGCCTGGCTG
CATCGCTCGGTGGCGCCGAGCATCACCGCACTGTTCGGCCCGGACAGCAAGCACCAGGGCGCCTTCGAACTG
GGCATGGGCCTGACCAACCTGCCGTTCGCCATCCCCAACGTGCGCCTGGAGAACCCCGAGGCCCCGGCGCAC
ACCCGGGTCGGCTGGTTCCGCTCGGTCTCCAACATCCCCCACGCCTTCGCCATCCAGAGCTTCGTCGGCGAA
CTGGCGGCGAAGGCCGGCCAGGACCCGAAGGACTACCTGCTCAAGCTGCTCGGCCCGGCGCGGCGGATCGAC
ACCGCCGAACTCGGCGACAGCTGGAACTACGGCGAGTCGCCGGAGCGCTACCCGCTGGATGTCGGCCGCCTG
CGCGGGGTGATCGAGGAGGCGGCGCGCCAGTCCGGCTGGGGCGGCGAGCTGCCCAGGGGCAGGGCGCGGGGA
ATCGCCGCGCACTACAGCTTCGTCACCTACGTGGCGGTGGTGATCGAGGTGGAGGTGAAGGACGACGGCGCG
CTGCTGGTGCACAAGGCCACCATCGCCGCCGACTGCGGTCCGCAGATCAACCCCGAGCGCATCCGCTCGCAG
CTCGAAGGCGCCTGCGTGATGGGCCTGGGCCTGGCGGCGCTGGGCGAGATCAGCTTCAAGGATGGCAAGGTC
CAGCAGGACAATTTCCACCAGTACGAGCTGGCGCGCATGCCGCTGGCGCCCAAGGCGGTGTCGGTGCATCTG
CTCAAGCCGGATGGCGACCTGCCGTTGGGCGGGGTCGGCGAGCCCGGCGTGCCGCCGATAGCGCCGGCGCTG
TGCAACGCGATCTTCGCCGCCACCGGCAAGCGCATCCGCGAGTTGCCGATCCGCAATCAGTTGCAGGGGTGG
CGGAAGGCCTAG