ViewGene

Locus Name:
GeneID:
Location:

GeneID:1949
TrivialName: PA14_21540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21540
PAO1 Ortholog Locus:PA3286
Sequence Length:1053
Protein Length:350
Start: 1867837
Stop: 1868889
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06674.1|AE004750_12 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 350/350 (100%), Positives = 350/350 (100%)
Sequence:
GTGGAGAGCTTCAATACCTTCGTGCGCCAGTACAACGACCAGCACGCCGAGGCCATCGCCAAGGGCGAACTG
GAGGCGCTGGCCGAGTCCAGCTCGGCGTTCATCGAGAAGGCGTCCGGCATCAAGAGCCGCTTCGTGATGAAC
AAGGAAGGCATCCTCGACCCGCAGCGCATGGTTCCGTACCTTCCCGAGCGCAGCAACGACGAGTGGTCGATC
CTCTGCGAGATGGCCGTGGCCGCCGCCAGGGAGGCGCTGCAGCGTGCCGGCCGCAGCGCCGCCGACATCGAC
GGGGTGATCGTCGCCTGCTCCAACCTGCAGCGCGCCTACCCGGCGATCGCGGTGGAGGTGCAGGCCGCGCTG
GGCATCCAGGGCTACGGCTACGACATGAACGTGGCCTGCTCCTCGGCCACCTTCGGTATCCAGGCCGCCACC
ACCGCGATCCAGACCGGCCAGGCGCGGGCGATCCTGATGGTCAACCCGGAGATCTGCACCGGCCACCTGAAC
TTCCGCGACCGCGACAGCCACTTCATCTTCGGCGACGCCTGCACCGCGGTGATCGTCGAGCGCGCCGACCTG
GCCGTGTCGAAGCACCAGTTCGACATCGTCAGCACCAGGCTGCTGACCCAGTTCTCCAACAACATCCGCAAC
AACTTCGGCTTCCTCAACCGCGCCGACGAGAGCGGTATTGGCAAGCGCGACAAGCTGTTCGTCCAGGAAGGC
CGCAAGGTGTTCAAGGATGTCTGCCCGATGGTCGCCGAGCTGATCGGCGAGCACCTGGCGGCCAATGAAATC
CAGGTCGCCGAGGTCAAGCGCTTCTGGCTGCACCAGGCCAACCTGAACATGAACCTGCTGATCACCCGCAAG
CTGCTCGGCCGCGACGCCGAGGCGCACGAGGCGCCGGTGATCCTCGACAGCTACGCGAATACCAGTTCCGCC
GGCTCGGTGATCGCCCTGCACAAGCACCAGGATGACCTGCCCAGCGGCGCCATCGGGGTGCTCAGCTCGTTC
GGCGCCGGTTACTCGATCGGTAGCGTGATCCTGCGTAAACACTGA
Translation:
MESFNTFVRQYNDQHAEAIAKGELEALAESSSAFIEKASGIKSRFVMNKEGILDPQRMVPYLPERSNDEWSI
LCEMAVAAAREALQRAGRSAADIDGVIVACSNLQRAYPAIAVEVQAALGIQGYGYDMNVACSSATFGIQAAT
TAIQTGQARAILMVNPEICTGHLNFRDRDSHFIFGDACTAVIVERADLAVSKHQFDIVSTRLLTQFSNNIRN
NFGFLNRADESGIGKRDKLFVQEGRKVFKDVCPMVAELIGEHLAANEIQVAEVKRFWLHQANLNMNLLITRK
LLGRDAEAHEAPVILDSYANTSSAGSVIALHKHQDDLPSGAIGVLSSFGAGYSIGSVILRKH*
AnnotationID:1958GeneID:1949
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:01
Gene Name:
Confidence Code:3
GeneProduct:putative 3-oxoacyl-(acyl-carrier-protein) synthase III
Cell Localization:()
Synonyms:fabH-2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0332
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57550.1| (AE016870) 3-oxoacyl-(acyl-carrier-protein) synthase III, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 373

 Score =  536 bits (1380), Expect = e-152
 Identities = 263/349 (75%), Positives = 304/349 (87%)

>gb|AAN70118.1|AE016651_8 (AE016791) 3-oxoacyl-(acyl-carrier-protein) synthase III, putative
           [Pseudomonas putida KT2440]
          Length = 390

 Score =  525 bits (1352), Expect = e-148
 Identities = 261/347 (75%), Positives = 298/347 (85%)

>gb|AAN55917.1|AE015729_1 (AE015729) 3-oxoacyl-(acyl-carrier-protein) synthase III
           [Shewanella oneidensis MR-1]
          Length = 341

 Score =  392 bits (1008), Expect = e-108
 Identities = 197/339 (58%), Positives = 250/339 (73%)

Structural Features:
COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]
CD-Length = 323 residues,  99.7% aligned
Score =  263 bits (673), Expect = 2e-71
Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 21/340 (6%)
Genomic Context:
Comment:
ReferenceID:14463
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21047
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32262
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1949_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1949

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3410 PA3286_tr translation of PA3286 350 99.99 99.99 0 1771.0
105061 gb|AAG06674.1|AE004750_12 (AE004750) hypothetical protein PA3286 [Pseudomonas aeruginosa PAO1] 350 99.71 99.99 0 1768.0
105062 gb|AAO57550.1| (AE016870) 3-oxoacyl-(acyl-carrier-protein) synthase III, putative [Pseudomonas syringae pv. tomato str. DC3000] 373 70.77 81.50 23 1383.0
105063 gb|AAN70118.1|AE016651_8 (AE016791) 3-oxoacyl-(acyl-carrier-protein) synthase III, putative [Pseudomonas putida KT2440] 390 67.17 76.66 40 1355.0
105064 gb|AAQ58771.1| (AE016913) probable 3-oxoacyl-[acyl-carrier-protein] synthase III [Chromobacterium violaceum ATCC 12472] 373 66.21 78.28 23 1284.0
GC ORFID: 44951How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3286Glimmer Score:
Start: 3086094Stop: 3085042
Length: 1053
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3286 translation of PA3286Homolog Bit Score 686.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6319 (ORF: BLASTX 579.0), t_PA3286 (ORF: GLIMMER)
GC ORF Sequence
GTGGAGAGCTTCAATACCTTCGTGCGCCAGTACAACGACCAGCACGCCGAGGCCATCGCCAAGGGCGAACTG
GAGGCGCTGGCCGAGTCCAGCTCGGCGTTCATCGAGAAGGCGTCCGGCATCAAGAGCCGCTTCGTGATGAAC
AAGGAAGGCATCCTCGACCCGCAGCGCATGGTTCCGTACCTTCCCGAGCGCAGCAACGACGAGTGGTCGATC
CTCTGCGAGATGGCCGTGGCCGCCGCCAGGGAGGCGCTGCAGCGTGCCGGCCGCAGCGCCGCCGACATCGAC
GGGGTGATCGTCGCCTGCTCCAACCTGCAGCGCGCCTACCCGGCGATCGCGGTGGAGGTGCAGGCCGCGCTG
GGCATCCAGGGCTACGGCTACGACATGAACGTGGCCTGCTCCTCGGCCACCTTCGGTATCCAGGCCGCCACC
ACCGCGATCCAGACCGGCCAGGCGCGGGCGATCCTGATGGTCAACCCGGAGATCTGCACCGGCCACCTGAAC
TTCCGCGACCGCGACAGCCACTTCATCTTCGGCGACGCCTGCACCGCGGTGATCGTCGAGCGCGCCGACCTG
GCCGTGTCGAAGCACCAGTTCGACATCGTCAGCACCAGGCTGCTGACCCAGTTCTCCAACAACATCCGCAAC
AACTTCGGCTTCCTCAACCGCGCCGACGAGAGCGGTATTGGCAAGCGCGACAAGCTGTTCGTCCAGGAAGGC
CGCAAGGTGTTCAAGGATGTCTGCCCGATGGTCGCCGAGCTGATCGGCGAGCACCTGGCGGCCAATGAAATC
CAGGTCGCCGAGGTCAAGCGCTTCTGGCTGCACCAGGCCAACCTGAACATGAACCTGCTGATCACCCGCAAG
CTGCTCGGCCGCGACGCCGAGGCGCACGAGGCGCCGGTGATCCTCGACAGCTACGCGAATACCAGTTCCGCC
GGCTCGGTGATCGCCCTGCACAAGCACCAGGATGACCTGCCCAGCGGCGCCATCGGGGTGCTCAGCTCGTTC
GGCGCCGGTTACTCGATCGGTAGCGTGATCCTGCGTAAACACTGA