ViewGene
Locus Name:
GeneID:
Location:

GeneID:1948
TrivialName: PA14_41150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41150
PAO1 Ortholog Locus:PA1808
Sequence Length:1020
Protein Length:339
Start: 3670001
Stop: 3671020
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05197.1|AE004607_3 (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 337/339 (99%), Positives = 337/339 (99%)
Sequence:
ATGCGCCTGTCTCCCATCAACCAGCGCCGCTGGGCCCGCTTCAAGAGCAACAAGCGTGGCTGGTGGTCGCTC
TGGCTGTTCCTCATCCTGTTCGTCGGCAGCCTCGGCGCCGAACTGATCGCCAACGACAAACCGCTGGTCGTG
CATTACGACGGCGGCTGGTATTTCCCGGTCTTCAAACGCTACCCGGAAACCACCTTCGGCGGCGAATTCCCC
CTGGAAGCCAACTACAAGAGCCCCTACATCAGCCAACTGATCGCCGAGAAGGACGGCTGGGTGCTTTGGCCG
CCGATCCCCTACAGCTACGACACCATCAACTACGAGCTGAAGGTTCCCGCCCCCGCCCCGCCGTCGGCGGAA
AACTGGCTGGGCACCGACGACcaagcCCGCGACGTGCTCGCCCGGGTGATTTAcggcttccGCGTGTCgatC
CTCTTCGCCCTGACCCTGACCgTGCTCagttcTCTGATCGgcGTCAccgTCGGCGccctgcAAggCTACTac
ggcggctgggtcgacctGcTcggccAGCGtTTTCCTGGAGTCTGGTCGGGGCTGCCGGTGCTCTACCTGCTG
ATCATCCTGGCCAGCTTCGTCCAGCCGAACTTCTGGTGGCTGCTGGGCATCATGCTGCTGTTTTCCTGGATG
AGCCTGGTGGACGTGGTCCGCGCCGAGTTCCTCCGCGGGCGTAACCTGGAATACGTCCGCGCCGCCCGGGCC
CTCGGCATGCGCAACAGCGCCATCATGTTCCGTCACATCCTGCCGAACGCGATGATCTCGACCCTGACCTTC
ATGCCGTTCATCCTCACCGGCGCCATCGGCACCCTCACCTCCCTGGACTTCCTCGGCTTCGGCCTGCCGCCC
GGCGCGCCGTCGCTGGGCGAGCTGGTCGCCCAGGGCAAGTCCAACCTCCAGGCGCCCTGGCTGGGCATTTCC
GCCTTCGTGGTGCTGGCGGTCATGCTGAGCCTGCTGGTGTTCATCGGCGAAGCCGCCCGCGACGCTTTCGAC
CCGAGGAAATGA
Translation:
MRLSPINQRRWARFKSNKRGWWSLWLFLILFVGSLGAELIANDKPLVVHYDGGWYFPVFKRYPETTFGGEFP
LEANYKSPYISQLIAEKDGWVLWPPIPYSYDTINYELKVPAPAPPSAENWLGTDDQARDVLARVIYGFRVSI
LFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFPGVWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWM
SLVDVVRAEFLRGRNLEYVRAARALGMRNSAIMFRHILPNAMISTLTFMPFILTGAIGTLTSLDFLGFGLPP
GAPSLGELVAQGKSNLQAPWLGISAFVVLAVMLSLLVFIGEAARDAFDPRK*
AnnotationID:1957GeneID:1948
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 18:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA1808
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69731.1|AE016609_5 (AE016789) peptide ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 339

 Score =  607 bits (1565), Expect = e-173
 Identities = 290/339 (85%), Positives = 317/339 (93%)

>gb|AAO57188.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 339

 Score =  607 bits (1564), Expect = e-173
 Identities = 291/339 (85%), Positives = 314/339 (92%)

>gb|AAF96491.1| (AE004389) peptide ABC transporter, permease protein, putative
           [Vibrio cholerae]
          Length = 352

 Score =  498 bits (1282), Expect = e-140
 Identities = 232/334 (69%), Positives = 284/334 (85%), Gaps = 1/334 (0%)






 
Structural Features:
COG4239, ABC-type uncharacterized transport system, permease component
CD-Length = 341 residues,  99.1% aligned
Score =  538 bits (1387), Expect = 4e-154
Identities = 254/339 (74%), Positives = 294/339 (86%), Gaps = 1/339 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37119




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1948_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1948
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3408
                           PA1808_tr
                           translation of PA1808
                           339
                           99.41
                           99.41
                           0
                           1769.0
     

     
     
105020
                           gb|AAG05197.1|AE004607_3
                           (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           339
                           99.41
                           99.41
                           0
                           1769.0
     

     
     
105022
                           gb|AAO57188.1|
                           (AE016869) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           339
                           85.84
                           92.62
                           0
                           1564.0
     

     
     
105021
                           gb|AAN69731.1|AE016609_5
                           (AE016789) peptide ABC transporter, permease protein [Pseudomonas putida KT2440]
                           339
                           85.54
                           93.51
                           0
                           1565.0
     

     
     
105023
                           gb|AAO56521.1|
                           (AE016866) peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           340
                           70.88
                           84.41
                           1
                           1298.0
     

     






      

          
GC ORFID: 44950How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1808Glimmer Score: 

          
Start: 1283908Stop: 1282889

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1808 translation of PA1808Homolog Bit Score 686.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene637 (ORF: BLASTX 612.0), psyr_15may02_Scaffold5_revised_gene6045 (ORF: BLASTX 509.0), psyr_15may02_Scaffold2_revised_gene3082 (ORF: BLASTX 493.0), t_PA2060 (ORF: BLASTX 479.0), t_PA1808 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGTCTCCCATCAACCAGCGCCGCTGGGCCCGCTTCAAGAGCAACAAGCGTGGCTGGTGGTCGCTC 
TGGCTGTTCCTCATCCTGTTCGTCGGCAGCCTCGGCGCCGAACTGATCGCCAACGACAAACCGCTGGTCGTG 
CATTACGACGGCGGCTGGTATTTCCCGGTCTTCAAACGCTACCCGGAAACCACCTTCGGCGGCGAATTCCCC 
CTGGAAGCCAACTACAAGAGCCCCTACATCAGCCAACTGATCGCCGAGAAGGACGGCTGGGTGCTTTGGCCG 
CCGATCCCCTACAGCTACGACACCATCAACTACGAGCTGAAGGTTCCCGCCCCCGCCCCGCCGTCGGCGGAA 
AACTGGCTGGGCACCGACGACcaagcCCGCGACGTGCTCGCCCGGGTGATTTAcggcttccGCGTGTCgatC 
CTCTTCGCCCTGACCCTGACCgTGCTCagttcTCTGATCGgcGTCAccgTCGGCGccctgcAAggCTACTac 
ggcggctgggtcgacctGcTcggccAGCGtTTTCCTGGAGTCTGGTCGGGGCTGCCGGTGCTCTACCTGCTG 
ATCATCCTGGCCAGCTTCGTCCAGCCGAACTTCTGGTGGCTGCTGGGCATCATGCTGCTGTTTTCCTGGATG 
AGCCTGGTGGACGTGGTCCGCGCCGAGTTCCTCCGCGGGCGTAACCTGGAATACGTCCGCGCCGCCCGGGCC 
CTCGGCATGCGCAACAGCGCCATCATGTTCCGTCACATCCTGCCGAACGCGATGATCTCGACCCTGACCTTC 
ATGCCGTTCATCCTCACCGGCGCCATCGGCACCCTCACCTCCCTGGACTTCCTCGGCTTCGGCCTGCCGCCC 
GGCGCGCCGTCGCTGGGCGAGCTGGTCGCCCAGGGCAAGTCCAACCTCCAGGCGCCCTGGCTGGGCATTTCC 
GCCTTCGTGGTGCTGGCGGTCATGCTGAGCCTGCTGGTGTTCATCGGCGAAGCCGCCCGCGACGCTTTCGAC 
CCGAGGAAATGA