ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1947

TrivialName: PA14_04000

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_04000

PAO1 Ortholog Locus: PA0306

Sequence Length: 1053

Protein Length: 350

Start: 360946

Stop: 361998

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03695.1|AE004468_7 (AE004468) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 349/350 (99%), Positives = 349/350 (99%)

Sequence:

ATGCAGGACGACCCGTCTACCAGCCCCCTGACCCATTCCGCCACGTTGCGGCGTCTGTTGTATGAAGCCCTG
GACGCCCTCGGGCTCGACCCCACCCGCGTCTACCGCAGCGTCTACCGGCGTATCCCGCTGCCGCCGCCGACC
CTGGGCGGCCGCCTGGTGCATGACAACGCCCCGTTGTTCTGGACCGAACTGGCGGCGGTGACCGGCGATGCC
GACATCGGCCTGCACCTGGGCGAGGCAATGAAGCCGCGCCTGCTCGATGTGGTCGGCTACCTGCTGCTGTCC
GCGCGCGACCTGGAGGAGGCGCTGCGCAGCTTCGTGCGTTTCCAGCACATTCTCTCCGGCGGTTTCGCCGCG
CGCCTCGAGGTCGAAGGGGAAACGGCAAGGCTGATCCTCGACATCAACTACCTGGGCTATGCCTCGCTGCGC
CAGCAGATCGAATGCCTGATGCTGCTGTTCCTCAAGCTGCTGGCGCTGATCAGCGACGACGAGTTCGTCGCC
GAGCGCATCGAGTTCCGCCACCGAGCCCCGCCGCGGCTGGGCGAACACCGCCGGTTGTTCGGCAGGCTGCCG
CTGTTCTCGCGGCCGCACGATGCCCTGGTGTTTTCCGCCGCCTTGCTGCGGCGTCCTTCGCGCAACGCCAAT
CCGGACATGCATGGCGTGCTGACCCGCCACGCGGAAGAACAGTCCCGCGAACTCAGCGAGAACCGCTTGCTC
AATCGCGTGCGCTACCTGATCGAGCTGCGCCTCGGGGAGGGCTATGGCTTGCGCCAGTGCGCGGCGGAGCTG
GGCCTTGGCAGCGGTGCCTTGCAGCGTGCGCTGGCCGCTGGGGGAGCGAGTTTCCGGCAGGTTCGCGATGAG
GTTCGCCGGCAGCGGGCGAGCGAGATGCTGTTGGCCGGTCGCGCCATCCGCGAGGTGGCCAAGGCTTGCGGG
TTCGCCGAGCTGTCGCCGTTCTACCGGGCCTTTCGCCGCTGGCACGCCGCGCCCCCGGAGCAATACAGGGCG
CGGCTGGCGAAGCGGGAAGAGGGTTACTCGACCAGCGGTACCTGA

Translation:

MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDA
DIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLR
QQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNAN
PDMHGVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDE
VRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT*

AnnotationID:1956 GeneID:1947

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 07:07:50

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA0306

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: smart00342

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  96.4% aligned
Score = 56.0 bits (135), Expect = 7e-09
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Genomic Context:

Comment:

ReferenceID:3897

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21043

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33639

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1947_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1947

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3407 PA0306_tr translation of PA0306 350 99.71 99.71 0 1774.0

105019 gb|AAG03695.1|AE004468_7 (AE004468) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 350 99.71 99.71 0 1774.0

GC ORFID: `44949`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0306`	Glimmer Score:
Start: `6162288`	Stop: `6163340`
Length: `1053`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0306 translation of PA0306`	Homolog Bit Score `687.0`
Other Homologs: `t_PA0306 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAGGACGACCCGTCTACCAGCCCCCTGACCCATTCCGCCACGTTGCGGCGTCTGTTGTATGAAGCCCTG GACGCCCTCGGGCTCGACCCCACCCGCGTCTACCGCAGCGTCTACCGGCGTATCCCGCTGCCGCCGCCGACC CTGGGCGGCCGCCTGGTGCATGACAACGCCCCGTTGTTCTGGACCGAACTGGCGGCGGTGACCGGCGATGCC GACATCGGCCTGCACCTGGGCGAGGCAATGAAGCCGCGCCTGCTCGATGTGGTCGGCTACCTGCTGCTGTCC GCGCGCGACCTGGAGGAGGCGCTGCGCAGCTTCGTGCGTTTCCAGCACATTCTCTCCGGCGGTTTCGCCGCG CGCCTCGAGGTCGAAGGGGAAACGGCAAGGCTGATCCTCGACATCAACTACCTGGGCTATGCCTCGCTGCGC CAGCAGATCGAATGCCTGATGCTGCTGTTCCTCAAGCTGCTGGCGCTGATCAGCGACGACGAGTTCGTCGCC GAGCGCATCGAGTTCCGCCACCGAGCCCCGCCGCGGCTGGGCGAACACCGCCGGTTGTTCGGCAGGCTGCCG CTGTTCTCGCGGCCGCACGATGCCCTGGTGTTTTCCGCCGCCTTGCTGCGGCGTCCTTCGCGCAACGCCAAT CCGGACATGCATGGCGTGCTGACCCGCCACGCGGAAGAACAGTCCCGCGAACTCAGCGAGAACCGCTTGCTC AATCGCGTGCGCTACCTGATCGAGCTGCGCCTCGGGGAGGGCTATGGCTTGCGCCAGTGCGCGGCGGAGCTG GGCCTTGGCAGCGGTGCCTTGCAGCGTGCGCTGGCCGCTGGGGGAGCGAGTTTCCGGCAGGTTCGCGATGAG GTTCGCCGGCAGCGGGCGAGCGAGATGCTGTTGGCCGGTCGCGCCATCCGCGAGGTGGCCAAGGCTTGCGGG TTCGCCGAGCTGTCGCCGTTCTACCGGGCCTTTCGCCGCTGGCACGCCGCGCCCCCGGAGCAATACAGGGCG CGGCTGGCGAAGCGGGAAGAGGGTTACTCGACCAGCGGTACCTGA