ViewGene
Locus Name:
GeneID:
Location:

GeneID:1946
TrivialName: PA14_28000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28000
PAO1 Ortholog Locus:PA2793
Sequence Length:1041
Protein Length:346
Start: 2423812
Stop: 2424852
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06181.1|AE004706_11 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 338/346 (97%), Positives = 340/346 (98%), Gaps = 2/346 (0%)
Sequence:
ATGAGACTGTCCCGCCCGCGTTTTACCCTTTCCGCCGCCTTGCTGCTTTCTCTTTCCCTTTCCGGTTGCGTG
TCTGAACTCGATTCGGGCGCCTATGGCAGCATGGACGATCCGCGCAACGCGCAGATGCTGGACCTGGTGGAC
CAGGCGCTGAAAGGGAACATGGCCGTGGTACTGGTGGCCGACGTGATGCCGCACAAGTCCCTGAGCGATGCG
CTGACCATGACCCAGTGGACGCCAACGGCGATCTGGGAGTACGAGAAGGACCCGAAGGTGACCTTCGGCCGC
AAGTTCCAGACCAACGCGCTGCAGCGGAAGCCCGACGAGACCTATCTGTTCAAGGCCTTCGAGGTGCATATC
CTGCCGCCCGGCAAGTACCTGCTGACCGGCGGCGACGACTACCAGATCCATGGCTTGCTCGACCAGGTCGGC
GCCCGCGGCGGTCCGCCCGGTTCGGGCCATGGCGCCAACGGCACCGCGTACCTGTCCCCCGAGCTGTATCGC
GAGTACTACCGGGAAGAAGTCTGGAAAGATGCCACCTATGGCAGCGAGATCAAGACCGAGAAGGTCTGCACC
GCCGTGCATGTGGCCTCGGGCGCCTGCGTGAGCTGGGGCGAGCAGCAATACACGCAGACGACCCAGGGCTCC
CAGGCCGGCTATTACCAGCAGACCGACTCCCGCGACGTACCTTCGATCAAGATCCAGGCACGCTTGCCGGTC
GACAAGGCGCTGGCCAGCTTCAGCGTGCAGGGCGGGCAATTGCTGCTGGCCCCGCGCATGCACCTGAAGACC
CCCGGCTACAAGTACCAGCAGTCGAAGTGCCGGGCGATCGATCCGAAGAAGATCGAATGCCCATTGGAAAAC
CTGACCGTCTACACCTGGCCGGCGCCGATGGACTTCAGCCAGTCCCTGATCGCCCAGCGGGCTCTGAGCGAC
AAGCACCGGCAACTGCTGTCCAGGCTCCAGCCCCTGCAGATCACACCGCTGCGCAAGCAGGGCATGGAAGAC
CCGGTCTGGGGCGTGCCGCTGTCATTGAAATAG
Translation:
MRLSRPRFTLSAALLLSLSLSGCVSELDSGAYGSMDDPRNAQMLDLVDQALKGNMAVVLVADVMPHKSLSDA
LTMTQWTPTAIWEYEKDPKVTFGRKFQTNALQRKPDETYLFKAFEVHILPPGKYLLTGGDDYQIHGLLDQVG
ARGGPPGSGHGANGTAYLSPELYREYYREEVWKDATYGSEIKTEKVCTAVHVASGACVSWGEQQYTQTTQGS
QAGYYQQTDSRDVPSIKIQARLPVDKALASFSVQGGQLLLAPRMHLKTPGYKYQQSKCRAIDPKKIECPLEN
LTVYTWPAPMDFSQSLIAQRALSDKHRQLLSRLQPLQITPLRKQGMEDPVWGVPLSLK*
AnnotationID:1955GeneID:1946
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2793
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1946
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3405
                           PA2793_tr
                           translation of PA2793
                           346
                           97.68
                           98.26
                           2
                           1776.0
     

     
     
105017
                           gb|AAG06181.1|AE004706_11
                           (AE004706) hypothetical protein PA2793 [Pseudomonas aeruginosa PAO1]
                           346
                           97.68
                           98.26
                           2
                           1776.0
     

     
     
3406
                           PA2581_tr
                           translation of PA2581
                           352
                           40.05
                           61.93
                           12
                           682.0
     

     
     
105018
                           gb|AAG05969.1|AE004686_7
                           (AE004686) hypothetical protein PA2581 [Pseudomonas aeruginosa PAO1]
                           352
                           40.05
                           61.93
                           12
                           682.0
     

     






      

          
GC ORFID: 44948How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2793Glimmer Score: 

          
Start: 2530114Stop: 2529074

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2793 translation of PA2793Homolog Bit Score 687.0

          
Other Homologs:  t_PA2581 (ORF: BLASTX 263.0), t_PA2793 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACTGTCCCGCCCGCGTTTTACCCTTTCCGCCGCCTTGCTGCTTTCTCTTTCCCTTTCCGGTTGCGTG 
TCTGAACTCGATTCGGGCGCCTATGGCAGCATGGACGATCCGCGCAACGCGCAGATGCTGGACCTGGTGGAC 
CAGGCGCTGAAAGGGAACATGGCCGTGGTACTGGTGGCCGACGTGATGCCGCACAAGTCCCTGAGCGATGCG 
CTGACCATGACCCAGTGGACGCCAACGGCGATCTGGGAGTACGAGAAGGACCCGAAGGTGACCTTCGGCCGC 
AAGTTCCAGACCAACGCGCTGCAGCGGAAGCCCGACGAGACCTATCTGTTCAAGGCCTTCGAGGTGCATATC 
CTGCCGCCCGGCAAGTACCTGCTGACCGGCGGCGACGACTACCAGATCCATGGCTTGCTCGACCAGGTCGGC 
GCCCGCGGCGGTCCGCCCGGTTCGGGCCATGGCGCCAACGGCACCGCGTACCTGTCCCCCGAGCTGTATCGC 
GAGTACTACCGGGAAGAAGTCTGGAAAGATGCCACCTATGGCAGCGAGATCAAGACCGAGAAGGTCTGCACC 
GCCGTGCATGTGGCCTCGGGCGCCTGCGTGAGCTGGGGCGAGCAGCAATACACGCAGACGACCCAGGGCTCC 
CAGGCCGGCTATTACCAGCAGACCGACTCCCGCGACGTACCTTCGATCAAGATCCAGGCACGCTTGCCGGTC 
GACAAGGCGCTGGCCAGCTTCAGCGTGCAGGGCGGGCAATTGCTGCTGGCCCCGCGCATGCACCTGAAGACC 
CCCGGCTACAAGTACCAGCAGTCGAAGTGCCGGGCGATCGATCCGAAGAAGATCGAATGCCCATTGGAAAAC 
CTGACCGTCTACACCTGGCCGGCGCCGATGGACTTCAGCCAGTCCCTGATCGCCCAGCGGGCTCTGAGCGAC 
AAGCACCGGCAACTGCTGTCCAGGCTCCAGCCCCTGCAGATCACACCGCTGCGCAAGCAGGGCATGGAAGAC 
CCGGTCTGGGGCGTGCCGCTGTCATTGAAATAG