ViewGene
Locus Name:
GeneID:
Location:

GeneID:1945
TrivialName: PA14_30730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30730
PAO1 Ortholog Locus:PA2581
Sequence Length:1041
Protein Length:346
Start: 2666538
Stop: 2665498
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05969.1|AE004686_7 (AE004686) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 345/346 (99%), Positives = 345/346 (99%)
Sequence:
ATGAAAACCATCGCTCGGCGTCTGAGCCCCTTCGCGATCCTGCTCCCGGCAAGCCTGTTGTCAGCCTGCGCC
TCCCTAGGCAACGCCGGACTCGGCGGCTCCCAGCAGAATCCCACCAACCAGCTCCTGAACATGATCGATGAG
GCTACCCGCGAAGGCATGTCCGTGGTGCTGGTACCGGCGCTCATGCCCAACAAGAGCGTGACGGACCTCTCC
AGCTACTCGCATCGGGTCATATTCAAGAACAAGGACGTGCCCGGGATCGCCTACATGCAGGCCTTTGCCAAC
AACGACCTGGAGAAGATCAAGGAAGCCGTCTATCTGTGGGACTTCCTCGAGGTCAACATCGTCCCGCCGGGA
ACCTACCTGCTGTCCGGAGGGATCGACTACAAGATCGACAGCACCCTTGCCCAGATCAAGGCGCCAAAGGGG
CAGCCGGCTGCCAGCCCACTTGGTTCGGTGAACCTGTCCGCCGTGCTGTATCGCCGGTTCGTGAAGGAGAAC
TACTGGCGCGACGCCTCCTATGCAGACAAAACCTACACACAGAATGTCTGCAGCGCCGTGCACATGGCCTCC
GGCCAATGCGTGGGCTGGACCGAGCAGCAATACAGCCAGCGGGAAATGGTCTCGGATGCCGGTTGGGCCGAA
GGCACGAAGATCGAGGATGTCCCCTCCATCAAGCTGCAAGCGCAGATACCCGACGCCTATGCCCCGCTGTCC
TTCACCATTCAGCCTGGGCAGATCCTGCTCAGCGATCGGTTCCACTTGAAGACCCCGGCCGTGAGCTATGAC
AGGAAGACCTGCAAGGCCGTGGACACGCAAAACATCAAGTGCGCCTTGCAGGATATCCAGGTCTTCATGAGG
CCAGCGCCCATGGAGCTGACGAAAAGGTTCATCGATCGCGAGCAGCCAAGGCTTGATGAAACGGGCCGCCAG
GTGCTCGCGCGGATCCAGCCGATGAAAACCGAGATACTCGGCGAAGCAGGCATGGAAGACCTGACCTGGGGC
CTGCCGGTTTCCTTGAAACGCAAGGCAAGATGA
Translation:
MKTIARRLSPFAILLPASLLSACASLGNAGLGGSQQNPTNQLLNMIDEATREGMSVVLVPALMPNKSVTDLS
SYSHRVIFKNKDVPGIAYMQAFANNDLEKIKEAVYLWDFLEVNIVPPGTYLLSGGIDYKIDSTLAQIKAPKG
QPAASPLGSVNLSAVLYRRFVKENYWRDASYADKTYTQNVCSAVHMASGQCVGWTEQQYSQREMVSDAGWAE
GTKIEDVPSIKLQAQIPDAYAPLSFTIQPGQILLSDRFHLKTPAVSYDRKTCKAVDTQNIKCALQDIQVFMR
PAPMELTKRFIDREQPRLDETGRQVLARIQPMKTEILGEAGMEDLTWGLPVSLKRKAR*
AnnotationID:1954GeneID:1945
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2581
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3893




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1945
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3403
                           PA2581_tr
                           translation of PA2581
                           346
                           99.71
                           99.71
                           0
                           1774.0
     

     
     
105015
                           gb|AAG05969.1|AE004686_7
                           (AE004686) hypothetical protein PA2581 [Pseudomonas aeruginosa PAO1]
                           346
                           99.71
                           99.71
                           0
                           1774.0
     

     
     
3404
                           PA2793_tr
                           translation of PA2793
                           355
                           40.00
                           60.84
                           20
                           681.0
     

     
     
105016
                           gb|AAG06181.1|AE004706_11
                           (AE004706) hypothetical protein PA2793 [Pseudomonas aeruginosa PAO1]
                           355
                           40.00
                           60.84
                           20
                           681.0
     

     






      

          
GC ORFID: 44947How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2581Glimmer Score: 

          
Start: 2287388Stop: 2288428

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2581 translation of PA2581Homolog Bit Score 687.0

          
Other Homologs:  t_PA2793 (ORF: BLASTX 263.0), t_PA2581 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCATCGCTCGGCGTCTGAGCCCCTTCGCGATCCTGCTCCCGGCAAGCCTGTTGTCAGCCTGCGCC 
TCCCTAGGCAACGCCGGACTCGGCGGCTCCCAGCAGAATCCCACCAACCAGCTCCTGAACATGATCGATGAG 
GCTACCCGCGAAGGCATGTCCGTGGTGCTGGTACCGGCGCTCATGCCCAACAAGAGCGTGACGGACCTCTCC 
AGCTACTCGCATCGGGTCATATTCAAGAACAAGGACGTGCCCGGGATCGCCTACATGCAGGCCTTTGCCAAC 
AACGACCTGGAGAAGATCAAGGAAGCCGTCTATCTGTGGGACTTCCTCGAGGTCAACATCGTCCCGCCGGGA 
ACCTACCTGCTGTCCGGAGGGATCGACTACAAGATCGACAGCACCCTTGCCCAGATCAAGGCGCCAAAGGGG 
CAGCCGGCTGCCAGCCCACTTGGTTCGGTGAACCTGTCCGCCGTGCTGTATCGCCGGTTCGTGAAGGAGAAC 
TACTGGCGCGACGCCTCCTATGCAGACAAAACCTACACACAGAATGTCTGCAGCGCCGTGCACATGGCCTCC 
GGCCAATGCGTGGGCTGGACCGAGCAGCAATACAGCCAGCGGGAAATGGTCTCGGATGCCGGTTGGGCCGAA 
GGCACGAAGATCGAGGATGTCCCCTCCATCAAGCTGCAAGCGCAGATACCCGACGCCTATGCCCCGCTGTCC 
TTCACCATTCAGCCTGGGCAGATCCTGCTCAGCGATCGGTTCCACTTGAAGACCCCGGCCGTGAGCTATGAC 
AGGAAGACCTGCAAGGCCGTGGACACGCAAAACATCAAGTGCGCCTTGCAGGATATCCAGGTCTTCATGAGG 
CCAGCGCCCATGGAGCTGACGAAAAGGTTCATCGATCGCGAGCAGCCAAGGCTTGATGAAACGGGCCGCCAG 
GTGCTCGCGCGGATCCAGCCGATGAAAACCGAGATACTCGGCGAAGCAGGCATGGAAGACCTGACCTGGGGC 
CTGCCGGTTTCCTTGAAACGCAAGGCAAGATGA