ViewGene
Locus Name:
GeneID:
Location:

GeneID:1943
TrivialName: PA14_54810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54810
PAO1 Ortholog Locus:PA0732
Sequence Length:1044
Protein Length:347
Start: 4856798
Stop: 4857841
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04121.1|AE004508_6 (AE004508) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 343/347 (98%), Positives = 344/347 (99%)
Sequence:
ATGAAAAGATCCCTTGCCGTACTGCTGCTGGCCTTCGCCGTCGGCAGCCTCCACGCGGCGCCCGCCAGCCCA
GCGAACGCGCCTTTGCCGCCGGCCGACATCAAGGCGCGGCTGAAGAGCATGAAGCCCGGCGAGTACCTCTGG
TACCCGGAGGTTTCCCCGCAGGGACCGGTGACCATCGTGGTCAGCCTTACCGAACAGAAGGCCTACATCTAC
CGCAACGGTATCGCCATCGGGGTCAGCACCCTCAGCTCCGGCAAGAAGGGCCGGGAGACCCCGACCGGAGTG
TTCTCGATCCTGCAAAAGAGCGTCGACCACAAGTCCGACCTCTACAACAGCGCGCCCATGCCCTACATGCAG
CGCCTTACCTGGGACGGCATCGCCCTGCACGCCGGCAACCTGCCCGGCTATCCCGCCTCCCACGGCTGCATC
CGCCTGCCCATGGCGTTCGCCAAGAAGCTCTACGGCATCACCGGATTCAGCTCCACCACGGTAATCATTTCC
AACGCCAGCAGCGCGCCGAAGGAAGTCGACCACCCCGGCCTGCTGGCGCCGACGGTAGCGGACGGGCGACCG
GTGACGCTGCCGGTTGAGCCCGGAGAGATCGCCTGGAACGACCCCGGCGCGGAGCGCGGTCCATTGTCGGTG
CTGATCAGCCGCGCCGACCAGCGCGCCTATGTCTACCGCGGCGGCCAGCGCATAGGCACCGCACCGGTGCAG
TTGCCGGCACGCCCGCAAACCGGCATGGCGGTGTTCTCGCTGCTGGAAAAGCCGACCCTGGACGAAATCGGC
GAGACCTCGCCGAACCTGCGCTGGTCGGTGGTCCAGGTGAGCAACCCGGGACAGGGCCTGACACCCTCCGAG
CAACTGGGCAAGATCCGCATGGACCCGACCTTCGTCCGCGAAATGCTGAGCGCCATGGACGTCGGCAGTACC
CTGGTGATCACCGACTGGGCCTCGACCCGGGACACCCACAGCGACTCCGATTTCACGGTGATCGCCACGGAA
ACACCGAACAATCCGACGAAATCGCTTAAAAAGTAG
Translation:
MKRSLAVLLLAFAVGSLHAAPASPANAPLPPADIKARLKSMKPGEYLWYPEVSPQGPVTIVVSLTEQKAYIY
RNGIAIGVSTLSSGKKGRETPTGVFSILQKSVDHKSDLYNSAPMPYMQRLTWDGIALHAGNLPGYPASHGCI
RLPMAFAKKLYGITGFSSTTVIISNASSAPKEVDHPGLLAPTVADGRPVTLPVEPGEIAWNDPGAERGPLSV
LISRADQRAYVYRGGQRIGTAPVQLPARPQTGMAVFSLLEKPTLDEIGETSPNLRWSVVQVSNPGQGLTPSE
QLGKIRMDPTFVREMLSAMDVGSTLVITDWASTRDTHSDSDFTVIATETPNNPTKSLKK*
AnnotationID:1952GeneID:1943
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0732
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03734
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAM40612.1| conserved hypothetical protein [Xanthomonas campestris pv.campestris str. ATCC 33913]
    Length = 351
 Score =  218 bits (555), Expect = 1e-55
 Identities = 143/364 (39%), Positives = 194/364 (53%), Gaps = 40/364 (10%)






 
Structural Features:
pfam03734, ErfK_YbiS_YhnG, ErfK/YbiS/YcfS/YnhG. This family of proteins are found in 
a range of bacteria.  These proteins may use peptidoglycan or a precursor as a substrate.
       CD-Length = 127 residues, 100.0% aligned
       Score = 71.9 bits (17






   
Genomic Context:






   
Comment:


















    ReferenceID:3889




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21036




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1943
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3400
                           PA0732_tr
                           translation of PA0732
                           347
                           98.84
                           99.13
                           0
                           1773.0
     

     
     
104987
                           gb|AAG04121.1|AE004508_6
                           (AE004508) hypothetical protein PA0732 [Pseudomonas aeruginosa PAO1]
                           347
                           98.84
                           99.13
                           0
                           1773.0
     

     
     
104992
                           emb|CAC45869.1|
                           (AL591786) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           454
                           27.31
                           39.86
                           153
                           371.0
     

     
     
104989
                           gb|AAL42299.1|
                           (AE009091) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           451
                           27.05
                           40.79
                           138
                           402.0
     

     
     
104990
                           gb|AAK87086.1|
                           (AE008056) AGR_C_2380p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           463
                           26.99
                           40.38
                           154
                           399.0
     

     






      

          
GC ORFID: 44945How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0732Glimmer Score: 

          
Start: 97109Stop: 96066

          
Length: 1044


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0732 translation of PA0732Homolog Bit Score 687.0

          
Other Homologs:  t_PA0732 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAGATCCCTTGCCGTACTGCTGCTGGCCTTCGCCGTCGGCAGCCTCCACGCGGCGCCCGCCAGCCCA 
GCGAACGCGCCTTTGCCGCCGGCCGACATCAAGGCGCGGCTGAAGAGCATGAAGCCCGGCGAGTACCTCTGG 
TACCCGGAGGTTTCCCCGCAGGGACCGGTGACCATCGTGGTCAGCCTTACCGAACAGAAGGCCTACATCTAC 
CGCAACGGTATCGCCATCGGGGTCAGCACCCTCAGCTCCGGCAAGAAGGGCCGGGAGACCCCGACCGGAGTG 
TTCTCGATCCTGCAAAAGAGCGTCGACCACAAGTCCGACCTCTACAACAGCGCGCCCATGCCCTACATGCAG 
CGCCTTACCTGGGACGGCATCGCCCTGCACGCCGGCAACCTGCCCGGCTATCCCGCCTCCCACGGCTGCATC 
CGCCTGCCCATGGCGTTCGCCAAGAAGCTCTACGGCATCACCGGATTCAGCTCCACCACGGTAATCATTTCC 
AACGCCAGCAGCGCGCCGAAGGAAGTCGACCACCCCGGCCTGCTGGCGCCGACGGTAGCGGACGGGCGACCG 
GTGACGCTGCCGGTTGAGCCCGGAGAGATCGCCTGGAACGACCCCGGCGCGGAGCGCGGTCCATTGTCGGTG 
CTGATCAGCCGCGCCGACCAGCGCGCCTATGTCTACCGCGGCGGCCAGCGCATAGGCACCGCACCGGTGCAG 
TTGCCGGCACGCCCGCAAACCGGCATGGCGGTGTTCTCGCTGCTGGAAAAGCCGACCCTGGACGAAATCGGC 
GAGACCTCGCCGAACCTGCGCTGGTCGGTGGTCCAGGTGAGCAACCCGGGACAGGGCCTGACACCCTCCGAG 
CAACTGGGCAAGATCCGCATGGACCCGACCTTCGTCCGCGAAATGCTGAGCGCCATGGACGTCGGCAGTACC 
CTGGTGATCACCGACTGGGCCTCGACCCGGGACACCCACAGCGACTCCGATTTCACGGTGATCGCCACGGAA 
ACACCGAACAATCCGACGAAATCGCTTAAAAAGTAG