ViewGene

Locus Name:
GeneID:
Location:

GeneID:1942
TrivialName: PA14_57070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57070
PAO1 Ortholog Locus:PA4391
Sequence Length:1002
Protein Length:333
Start: 5085537
Stop: 5084536
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07779.1|AE004855_1 (AE004855) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/333 (100%), Positives = 333/333 (100%)
Sequence:
ATGTCGCTCAGAGCCCTCTGTTCAATCGTCGTGATGCTCCTGGCCGGCCCCGCGCTGGCCGACACCGTATGG
CTGGACAACGGCGACCGCCTGTCCGGCGAGATCGTGCTGATGGACGGCGGCAAGCTGGCGCTGAAGACCCGT
TATGCCGGCCAGGTGCTGATCGATTGGAAGGATATCGACACCATCAGTTCCGACAAACCCCTGCTGATCAAG
CAGCAGGGCGTATCCGGGCAGCGTAGCCGAACCCTGGAGGCGGCGGGCAAGGGCATGGTGCGGATCGTCGAT
GGCGGCAGCCATACCGTCCCGCTGGCCAGTATTCGCCAGATGGTGCCGCCGCGACCGCTGGTGGAGGACCTG
GTCTGGGAGGGCAATCTCGACGTCAAGCTGGATAGCAAGCGCAACGACAGCGACAAGGACGAATGGAAGCTC
AAGGGTGATACCCGGCTTCGCCATGGTGCCTGGCGCCACGTGCTGGCGGGGGAAGTGGAGCGGGAAAAGAAG
GACGGGCGCAAGGTCGAGGACAACTGGGAGCTGGACTACGACCTCGATCGCTTCTTCGACGAACACTGGTTC
TGGCGCGGCAGCTATTCGCAGAAGCACGATGCGATCGACAACCTGGAGCGCCAGAGCGCGCTGGGAACCGGC
CCCGGCTACCAGTTCTGGGACGACGAACTCGGGCGTTTCGACCTGGTCGCCGAGATCAGTCGCTGGCAACTG
GAGTGGCGCGATCAGCCGCGCGAGGATTTCACCTCCTATTCGCTGGAGTGGGACTACAAGCGGCTGCTCGCC
GGGACCCGGCTGGAGCTGTACAGCAAGGGAACCGTGCTGGTTCCCGGCATCGAGCGGATCGACTACCTGCTC
GACAGCGAATACGGCCTGCGCTATCGCCTGAACAGTTGGGCGCGTCTTTCGTTCCTCTATGAACTGGACCAG
TTGCGCACCGAGGGGGGCACCCAGTCCGACCGGCATTACCTGATCGGGGTCGGCGTCGGCTGGTGA
Translation:
MSLRALCSIVVMLLAGPALADTVWLDNGDRLSGEIVLMDGGKLALKTRYAGQVLIDWKDIDTISSDKPLLIK
QQGVSGQRSRTLEAAGKGMVRIVDGGSHTVPLASIRQMVPPRPLVEDLVWEGNLDVKLDSKRNDSDKDEWKL
KGDTRLRHGAWRHVLAGEVEREKKDGRKVEDNWELDYDLDRFFDEHWFWRGSYSQKHDAIDNLERQSALGTG
PGYQFWDDELGRFDLVAEISRWQLEWRDQPREDFTSYSLEWDYKRLLAGTRLELYSKGTVLVPGIERIDYLL
DSEYGLRYRLNSWARLSFLYELDQLRTEGGTQSDRHYLIGVGVGW*
AnnotationID:1951GeneID:1942
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4391
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3887
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21034
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1942

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3398 PA4391_tr translation of PA4391 333 99.99 99.99 0 1775.0
104983 gb|AAG07779.1|AE004855_1 (AE004855) hypothetical protein PA4391 [Pseudomonas aeruginosa PAO1] 333 99.99 99.99 0 1775.0
3399 PA4390_tr translation of PA4390 335 45.07 62.98 2 822.0
104984 gb|AAG07778.1|AE004854_14 (AE004854) hypothetical protein PA4390 [Pseudomonas aeruginosa PAO1] 335 45.07 62.98 2 822.0
104986 gb|AAO57831.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 335 42.08 60.29 2 732.0
GC ORFID: 44944How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4391Glimmer Score:
Start: 4349213Stop: 4348212
Length: 1002
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4391 translation of PA4391Homolog Bit Score 688.0
Other Homologs: t_PA4390 (ORF: BLASTX 321.0), psyr_15may02_Scaffold12_revised_gene2053 (ORF: BLASTX 288.0), t_PA4391 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCTCAGAGCCCTCTGTTCAATCGTCGTGATGCTCCTGGCCGGCCCCGCGCTGGCCGACACCGTATGG
CTGGACAACGGCGACCGCCTGTCCGGCGAGATCGTGCTGATGGACGGCGGCAAGCTGGCGCTGAAGACCCGT
TATGCCGGCCAGGTGCTGATCGATTGGAAGGATATCGACACCATCAGTTCCGACAAACCCCTGCTGATCAAG
CAGCAGGGCGTATCCGGGCAGCGTAGCCGAACCCTGGAGGCGGCGGGCAAGGGCATGGTGCGGATCGTCGAT
GGCGGCAGCCATACCGTCCCGCTGGCCAGTATTCGCCAGATGGTGCCGCCGCGACCGCTGGTGGAGGACCTG
GTCTGGGAGGGCAATCTCGACGTCAAGCTGGATAGCAAGCGCAACGACAGCGACAAGGACGAATGGAAGCTC
AAGGGTGATACCCGGCTTCGCCATGGTGCCTGGCGCCACGTGCTGGCGGGGGAAGTGGAGCGGGAAAAGAAG
GACGGGCGCAAGGTCGAGGACAACTGGGAGCTGGACTACGACCTCGATCGCTTCTTCGACGAACACTGGTTC
TGGCGCGGCAGCTATTCGCAGAAGCACGATGCGATCGACAACCTGGAGCGCCAGAGCGCGCTGGGAACCGGC
CCCGGCTACCAGTTCTGGGACGACGAACTCGGGCGTTTCGACCTGGTCGCCGAGATCAGTCGCTGGCAACTG
GAGTGGCGCGATCAGCCGCGCGAGGATTTCACCTCCTATTCGCTGGAGTGGGACTACAAGCGGCTGCTCGCC
GGGACCCGGCTGGAGCTGTACAGCAAGGGAACCGTGCTGGTTCCCGGCATCGAGCGGATCGACTACCTGCTC
GACAGCGAATACGGCCTGCGCTATCGCCTGAACAGTTGGGCGCGTCTTTCGTTCCTCTATGAACTGGACCAG
TTGCGCACCGAGGGGGGCACCCAGTCCGACCGGCATTACCTGATCGGGGTCGGCGTCGGCTGGTGA