ViewGene
Locus Name:
GeneID:
Location:

GeneID:1940
TrivialName: PA14_51780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51780
PAO1 Ortholog Locus:PA0967
Sequence Length:1059
Protein Length:352
Start: 4599246
Stop: 4598188
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04356.1|AE004530_9 (AE004530) Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
Identities = 352/352 (100%), Positives = 352/352 (100%)
Sequence:
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAACTGGACCGCGCCATT
CGCCCGCTGAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCC
GCGCGCGGCCGCCAGGAGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTG
GCGAATATCATCGCCCAGGAAATGGGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGC
GATCTCGCCGCGTTGCTGACCAACCTGGAGGCCGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCG
CCCATCGTCGAAGAAGTGTTGTATCCGGCCATGGAAGATTTCCAACTGGACATCATGATCGGCGAAGGGCCC
GCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACGCTGGTCGGCGCGACCACCCGTGCCGGCATGCTG
ACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGTCGAGGACCTGGCGACC
ATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCGCCAAGCGC
GCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCAC
CTCGACCGTCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCT
GCGGCGTTGAGCGAGGAGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATC
ATGCGGACACCGCGGGGACGCGTGGTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGG
TTGGGGCCGGGGGTGACGACGGATCTATTCACGTCTGAAGATGGTAATTAA
Translation:
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTL
ANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGP
AARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKR
ARGTPRIANRLLRRVRDFAEVRGQGDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLA
AALSEERHTIEDVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN*
AnnotationID:1949GeneID:1940
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:30
Gene Name:ruvB
Confidence Code:1
GeneProduct:Holliday junction DNA helicase RuvB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2255
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication,
recombination, and repair]
     CD-Length = 332 residues,  99.7% aligned
     Score =  540 bits (1394), Expect = 8e-155






   
Genomic Context:
operon:orf26, ruvCAB 






   
Comment:


















    ReferenceID:3883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21030




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32061




  
Author/Investigator(s):
        Hishida T, Iwasaki H, Ishioka K, Shinagawa H.





  
Title:
        Molecular analysis of the Pseudomonas aeruginosa genes, ruvA, ruvB and ruvC, involved in processing of homologous recombination intermediates.




  
PubMed:
        97136691


MedLine:
        




    
Source:
Gene. 1996 Dec 5;182(1-2):63-70.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1940
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3396
                           PA0967_tr
                           translation of PA0967
                           352
                           99.99
                           99.99
                           0
                           1776.0
     

     
     
104800
                           gb|AAG04356.1|AE004530_9
                           (AE004530) Holliday junction DNA helicase RuvB [Pseudomonas aeruginosa PAO1]
                           352
                           99.99
                           99.99
                           0
                           1776.0
     

     
     
104801
                           dbj|BAA11819.1|
                           (D83138) Holliday junction specific DNA helicase [Pseudomonas aeruginosa]
                           352
                           99.71
                           99.71
                           0
                           1772.0
     

     
     
104802
                           gb|AAN66841.1|AE016312_12
                           (AE016778) Holliday junction DNA helicase RuvB [Pseudomonas putida KT2440]
                           353
                           84.98
                           90.93
                           6
                           1500.0
     

     
     
104803
                           gb|AAO57436.1|
                           (AE016870) Holliday junction DNA helicase RuvB [Pseudomonas syringae pv. tomato str. DC3000]
                           353
                           76.77
                           80.73
                           42
                           1377.0
     

     






      

          
GC ORFID: 44942How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0967Glimmer Score: 

          
Start: 354661Stop: 355719

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0967 translation of PA0967Homolog Bit Score 688.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4687 (ORF: BLASTX 605.0), t_PA0967 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAACTGGACCGCGCCATT 
CGCCCGCTGAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCC 
GCGCGCGGCCGCCAGGAGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTG 
GCGAATATCATCGCCCAGGAAATGGGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGC 
GATCTCGCCGCGTTGCTGACCAACCTGGAGGCCGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCG 
CCCATCGTCGAAGAAGTGTTGTATCCGGCCATGGAAGATTTCCAACTGGACATCATGATCGGCGAAGGGCCC 
GCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACGCTGGTCGGCGCGACCACCCGTGCCGGCATGCTG 
ACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGTCGAGGACCTGGCGACC 
ATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCGCCAAGCGC 
GCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG 
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCAC 
CTCGACCGTCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCT 
GCGGCGTTGAGCGAGGAGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATC 
ATGCGGACACCGCGGGGACGCGTGGTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGG 
TTGGGGCCGGGGGTGACGACGGATCTATTCACGTCTGAAGATGGTAATTAA