ViewGene

Locus Name:
GeneID:
Location:

GeneID:1939
TrivialName: PA14_02930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02930
PAO1 Ortholog Locus:PA0237
Sequence Length:1044
Protein Length:347
Start: 257439
Stop: 258482
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03626.1|AE004461_9 (AE004461) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 343/347 (98%), Positives = 344/347 (99%)
Sequence:
TTGGACGCACCGCTTCGCATCGCCCTCATCGGCGCCGGCAACATGGGCCGCCAGCATTACCATCGCTTGCAG
CGAATCGCCGGCGCGCGCCTGTGTGCGGTGGCCGATCCCCAGGGCCAGGCGTTCGCCGCGGACGCCGGCGTG
CCCTGGTTCGGCGATCATCGGAGGTTGCTGGAAGAAGCCCGGCCGCAAGCGGCGATCGTCGCCAATCCGAAC
AACCTGCATGTCGCCACCGCCCTCGACTGCCTCGCCGCCGGGGTGCCGCTGCTGCTGGAAAAACCGGTCGGC
GTGCAGCTCGACGAAGTGAGCGAGCTGGTGGCCGTCGCCCGGCGATCTGGCGTTCCGCTGCTGGTCGGTCAC
CATCGTCGGCACAATCCGCTGGTCGTGCGGGCGCGCCAATTGATCGCCGAGGGCGCGCTCGGTCGGTTGCTG
TCGGTCACCGCGCTCTGGCAGTTGAAGAAGCCCGACAGTTATTTCGAGGTGGCCTGGCGTCGCGAGCCCGGC
GCGGGAATGTTGCTGACCAACCTGATCCATGACCTCGACCTGCTCCGCCACCTGTGCGGGGAAGTGCGGGAG
GTGCAGGCGCTGGCCGGCAACGCTATCCGTGGCCTGCCCAACGAAGACAACGTCGCGCTGCTCCTGCGCTTC
GCCAATGGCGCCCTGGGCAGCCTGACCGGTTGCGACGCTGCGGCGGCGCCCTGGAGCTGGGAGCTGGCCGCC
GGGGAGAACCCGGTCTATCCGCGCCAGGCCGAGCAACCCTGCTACCTGCTGGCCGGCACCGAGGGTGCCCTG
AGCCTGCCCCAGCTCCGCCGCTGGCGCTACGCCGAGGCCCGGCAGGGCTGGCACGACCCGCTGGCGGCCAGC
GTGGAGGCCGTGGCGGCAGGCGACCCCCTGCAACGCCAGCTAGAGCACTTCGTCCGGGTCGCGCGGGGCGAG
GAAGCGCCATTGATGGATGCCACCGACGCCGCTCGCACCCTGGCGCTGGTCGAGGCGGTTCGCGAGGCCGCG
CGCAGTGGCCGGGCCTGCGCGCCGGCCAGTTTCTGA
Translation:
MDAPLRIALIGAGNMGRQHYHRLQRIAGARLCAVADPQGQAFAADAGVPWFGDHRRLLEEARPQAAIVANPN
NLHVATALDCLAAGVPLLLEKPVGVQLDEVSELVAVARRSGVPLLVGHHRRHNPLVVRARQLIAEGALGRLL
SVTALWQLKKPDSYFEVAWRREPGAGMLLTNLIHDLDLLRHLCGEVREVQALAGNAIRGLPNEDNVALLLRF
ANGALGSLTGCDAAAAPWSWELAAGENPVYPRQAEQPCYLLAGTEGALSLPQLRRWRYAEARQGWHDPLAAS
VEAVAAGDPLQRQLEHFVRVARGEEAPLMDATDAARTLALVEAVREAARSGRACAPASF*
AnnotationID:1948GeneID:1939
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA0237
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative dehydrogenase
Functional Category Confidence Code:5
COGs:COG0673,pfam01408
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68210.1|AE016454_5 (AE016783) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 350

 Score =  518 bits (1334), Expect = e-146
 Identities = 250/347 (72%), Positives = 291/347 (83%), Gaps = 2/347 (0%)

Structural Features:
COG0673, MviM, Predicted dehydrogenases and related proteins
CD-Length = 342 residues,  99.1% aligned
Score =  177 bits (449), Expect = 2e-45
Identities = 113/356 (31%), Positives = 161/356 (45%), Gaps = 31/356 (8%)

pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold.
CD-Length = 120 residues, 100.0% aligned
Score = 86.8 bits (215), Expect = 4e-18
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Genomic Context:
Comment:
ReferenceID:14461
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21028
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33591
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1939_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1939

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3395 PA0237_tr translation of PA0237 347 98.84 99.13 0 1777.0
104796 gb|AAG03626.1|AE004461_9 (AE004461) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 347 98.55 99.13 0 1775.0
104797 gb|AAN68210.1|AE016454_5 (AE016783) oxidoreductase, putative [Pseudomonas putida KT2440] 350 71.14 83.14 3 1332.0
104798 dbj|BAC48929.1| (AP005948) blr3664 [Bradyrhizobium japonicum USDA 110] 378 45.23 59.78 32 841.0
104799 dbj|BAC51650.1| (AP005958) bll6385 [Bradyrhizobium japonicum USDA 110] 355 40.84 59.71 16 752.0
GC ORFID: 44941How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0237Glimmer Score:
Start: 6058780Stop: 6059823
Length: 1044
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0237 translation of PA0237Homolog Bit Score 689.0
Other Homologs: t_PA0237 (ORF: GLIMMER)
GC ORF Sequence
TTGGACGCACCGCTTCGCATCGCCCTCATCGGCGCCGGCAACATGGGCCGCCAGCATTACCATCGCTTGCAG
CGAATCGCCGGCGCGCGCCTGTGTGCGGTGGCCGATCCCCAGGGCCAGGCGTTCGCCGCGGACGCCGGCGTG
CCCTGGTTCGGCGATCATCGGAGGTTGCTGGAAGAAGCCCGGCCGCAAGCGGCGATCGTCGCCAATCCGAAC
AACCTGCATGTCGCCACCGCCCTCGACTGCCTCGCCGCCGGGGTGCCGCTGCTGCTGGAAAAACCGGTCGGC
GTGCAGCTCGACGAAGTGAGCGAGCTGGTGGCCGTCGCCCGGCGATCTGGCGTTCCGCTGCTGGTCGGTCAC
CATCGTCGGCACAATCCGCTGGTCGTGCGGGCGCGCCAATTGATCGCCGAGGGCGCGCTCGGTCGGTTGCTG
TCGGTCACCGCGCTCTGGCAGTTGAAGAAGCCCGACAGTTATTTCGAGGTGGCCTGGCGTCGCGAGCCCGGC
GCGGGAATGTTGCTGACCAACCTGATCCATGACCTCGACCTGCTCCGCCACCTGTGCGGGGAAGTGCGGGAG
GTGCAGGCGCTGGCCGGCAACGCTATCCGTGGCCTGCCCAACGAAGACAACGTCGCGCTGCTCCTGCGCTTC
GCCAATGGCGCCCTGGGCAGCCTGACCGGTTGCGACGCTGCGGCGGCGCCCTGGAGCTGGGAGCTGGCCGCC
GGGGAGAACCCGGTCTATCCGCGCCAGGCCGAGCAACCCTGCTACCTGCTGGCCGGCACCGAGGGTGCCCTG
AGCCTGCCCCAGCTCCGCCGCTGGCGCTACGCCGAGGCCCGGCAGGGCTGGCACGACCCGCTGGCGGCCAGC
GTGGAGGCCGTGGCGGCAGGCGACCCCCTGCAACGCCAGCTAGAGCACTTCGTCCGGGTCGCGCGGGGCGAG
GAAGCGCCATTGATGGATGCCACCGACGCCGCTCGCACCCTGGCGCTGGTCGAGGCGGTTCGCGAGGCCGCG
CGCAGTGGCCGGGCCTGCGCGCCGGCCAGTTTCTGA