ViewGene
Locus Name:
GeneID:
Location:

GeneID:1938
TrivialName: PA14_31610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31610
PAO1 Ortholog Locus:PA2549
Sequence Length:1044
Protein Length:347
Start: 2746870
Stop: 2745827
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05937.1|AE004683_1 (AE004683) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 346/347 (99%), Positives = 346/347 (99%)
Sequence:
ATGGCAGCTCTGCATGCATTTCTCACCGAACCGTTCCTCGGTACGGCTATCTGGTTCTGGCTGGCCTTCCTG
GCCATCGTCATCGTTCTCCTGGTCCTCGACCTCGGCGTGCTGCAACGCGACCACCACGAAATCGGCGTGCGC
GAAAGCCTGCTGCTGTCCGCCGGCTACTTCGCCTGCGGCCTGGCCTTCGGCGGCTGGGTCTGGTACGCCTTC
GGCCCCACCAGCGCGGTGGAGTACTACACCGGCTTCCTGGTCGAACAGTCGCTATCGATGGACAACGTGTTC
GTCATGGCGATGATCTTCAGTTTCTTCGGCATCCCCCGCCGCTACCAGCACCAGGTGCTGTTCTGGGGCATC
CTCGGCGCCATCGTCCTGCGGGCCATCATGATCGGCCTGGGCGCCGCGCTGGTGAAGGAATTCGACTGGATC
ATGTACGTGTTCGGCGCCTTCCTGCTGTTCAGCGGCGTGAAGATGCTGTTCAACAAGCACGAGGAAGAACCC
GACCTGGAGCACAACCCGGTGCTGCGCTTCCTGCGCAAGCACATGCGGGTGACCAAGGAACTGCACGAGCAT
CACTTCTTCGTCCGCCTGCCGGACGCCAGCGGCAAGCTGGTGCGCTACGCCACCCCGCTGTTCTTCGCCCTG
GTGCTGATCGAGCTGGCCGACCTGGTGTTCGCGGTGGACAGCGTGCCGGCGATCTTCGCCATCACCCAGGAC
CCGTTCATCGTCTACACCTCGAACATCTTCGCCATCCTCGGCCTGCGCGCCCTGTACTTCTCGCTGGCGGCG
ATGATCCACCGCTTCGTCTACCTGAAATACGCCCTGGCCCTGGTGCTGGTGTTCATCGGTGCGAAGATCATG
CTCCACGGTGTGATCGGCAAGATTCCCGCCGGCCTCTCGCTTGGCGTAACCTTCGGCCTGCTGGCGGGCGGT
ATCCTGCTCTCCCTGCTGAAGACCCGCACGCCGAAAGCCACCGTCGAGGACAAGGCCGAACCGAATGCCGAA
CACGCTCTGGATCGAACGTCTGGACACCCACGCTGA
Translation:
MAALHAFLTEPFLGTAIWFWLAFLAIVIVLLVLDLGVLQRDHHEIGVRESLLLSAGYFACGLAFGGWVWYAF
GPTSAVEYYTGFLVEQSLSMDNVFVMAMIFSFFGIPRRYQHQVLFWGILGAIVLRAIMIGLGAALVKEFDWI
MYVFGAFLLFSGVKMLFNKHEEEPDLEHNPVLRFLRKHMRVTKELHEHHFFVRLPDASGKLVRYATPLFFAL
VLIELADLVFAVDSVPAIFAITQDPFIVYTSNIFAILGLRALYFSLAAMIHRFVYLKYALALVLVFIGAKIM
LHGVIGKIPAGLSLGVTFGLLAGGILLSLLKTRTPKATVEDKAEPNAEHALDRTSGHPR*
AnnotationID:1947GeneID:1938
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 22:10:15
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein, TerC family
Cell Localization:()
Synonyms:PA2549
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0861,pfam03741
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68912.1|AE016523_1 (AE016786) membrane protein, TerC family [Pseudomonas putida
           KT2440]
          Length = 327

 Score =  449 bits (1156), Expect = e-126
 Identities = 219/321 (68%), Positives = 266/321 (82%)

>gb|AAL42857.1| (AE009140) transporter [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 327

 Score =  402 bits (1033), Expect = e-111
 Identities = 197/325 (60%), Positives = 254/325 (78%), Gaps = 3/325 (0%)

>gb|AAN54801.1|AE015619_3 (AE015619) membrane protein, putative [Shewanella oneidensis MR-1]
          Length = 325

 Score =  382 bits (981), Expect = e-105
 Identities = 197/324 (60%), Positives = 242/324 (74%), Gaps = 7/324 (2%)








 
Structural Features:
COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues,  98.8% aligned
Score =  181 bits (461), Expect = 1e-46
Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 25/270 (9%)

pfam03741, TerC, Integral membrane protein TerC family. 
CD-Length = 222 residues, 100.0% aligned
Score =  181 bits (460), Expect = 2e-46
Identities = 99/238 (41%), Positives = 143/238 (60%), Gaps = 16/238 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3879




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21026




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33123




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1938_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1938
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3394
                           PA2549_tr
                           translation of PA2549
                           347
                           99.71
                           99.71
                           0
                           1777.0
     

     
     
104761
                           gb|AAG05937.1|AE004683_1
                           (AE004683) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           347
                           99.71
                           99.71
                           0
                           1777.0
     

     
     
104762
                           gb|AAN68050.1|AE016437_7
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           355
                           67.04
                           79.71
                           9
                           1230.0
     

     
     
104763
                           gb|AAN68912.1|AE016523_1
                           (AE016786) membrane protein, TerC family [Pseudomonas putida KT2440]
                           347
                           63.97
                           77.52
                           20
                           1155.0
     

     
     
104764
                           gb|AAL42857.1|
                           (AE009140) transporter [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           350
                           56.28
                           72.57
                           26
                           1034.0
     

     






      

          
GC ORFID: 44940How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2549Glimmer Score: 

          
Start: 2207056Stop: 2208099

          
Length: 1044


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2549 translation of PA2549Homolog Bit Score 689.0

          
Other Homologs:  t_PA2549 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGCTCTGCATGCATTTCTCACCGAACCGTTCCTCGGTACGGCTATCTGGTTCTGGCTGGCCTTCCTG 
GCCATCGTCATCGTTCTCCTGGTCCTCGACCTCGGCGTGCTGCAACGCGACCACCACGAAATCGGCGTGCGC 
GAAAGCCTGCTGCTGTCCGCCGGCTACTTCGCCTGCGGCCTGGCCTTCGGCGGCTGGGTCTGGTACGCCTTC 
GGCCCCACCAGCGCGGTGGAGTACTACACCGGCTTCCTGGTCGAACAGTCGCTATCGATGGACAACGTGTTC 
GTCATGGCGATGATCTTCAGTTTCTTCGGCATCCCCCGCCGCTACCAGCACCAGGTGCTGTTCTGGGGCATC 
CTCGGCGCCATCGTCCTGCGGGCCATCATGATCGGCCTGGGCGCCGCGCTGGTGAAGGAATTCGACTGGATC 
ATGTACGTGTTCGGCGCCTTCCTGCTGTTCAGCGGCGTGAAGATGCTGTTCAACAAGCACGAGGAAGAACCC 
GACCTGGAGCACAACCCGGTGCTGCGCTTCCTGCGCAAGCACATGCGGGTGACCAAGGAACTGCACGAGCAT 
CACTTCTTCGTCCGCCTGCCGGACGCCAGCGGCAAGCTGGTGCGCTACGCCACCCCGCTGTTCTTCGCCCTG 
GTGCTGATCGAGCTGGCCGACCTGGTGTTCGCGGTGGACAGCGTGCCGGCGATCTTCGCCATCACCCAGGAC 
CCGTTCATCGTCTACACCTCGAACATCTTCGCCATCCTCGGCCTGCGCGCCCTGTACTTCTCGCTGGCGGCG 
ATGATCCACCGCTTCGTCTACCTGAAATACGCCCTGGCCCTGGTGCTGGTGTTCATCGGTGCGAAGATCATG 
CTCCACGGTGTGATCGGCAAGATTCCCGCCGGCCTCTCGCTTGGCGTAACCTTCGGCCTGCTGGCGGGCGGT 
ATCCTGCTCTCCCTGCTGAAGACCCGCACGCCGAAAGCCACCGTCGAGGACAAGGCCGAACCGAATGCCGAA 
CACGCTCTGGATCGAACGTCTGGACACCCACGCTGA