ViewGene
Locus Name:
GeneID:
Location:

GeneID:1937
TrivialName: PA14_07780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07780
PAO1 Ortholog Locus:PA0596
Sequence Length:1017
Protein Length:338
Start: 669475
Stop: 670491
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD22455.1|AF116284_1 (AF116284) unknown [Pseudomonas aeruginosa]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGTCTGATGATGCCCGTTTCCAGCAGCTGAATCGCTGGTTGGACTCTTGTTTGCCCGAGTTGTTCGTTGCC
GAAGGTTGGGGGGAAGTGCCCCCCGCCGAACTGATCCCGGCCAGTAGCGACGCCAGCTTCCGTCGTTATTTC
CGCTGGCAGGGAGGGGACCGCAGCCTGGTGGTGATGGACGCGCCGCCGCCCCAGGAAGACTGCCGACCGTTC
GTCAAGGTCGCCGGACTGCTCGCCGGAGCCGGCGTGCATGTGCCGAGGATTCTCGCCCAGGATCTGGAGAAC
GGTTTCCTGCTGCTCAGTGACCTGGGCCGGCAGACCTACCTCGACGTGCTTCATCCCGGAAATGCCGACGAG
CTGTTCGAACCGGCCCTGGATGCGCTGATCGCCTTCCAGAAGGTCGATGTCGCCGGTGTCCTGCCTGCCTAC
GACGAAGCGGTGCTGCGCCGCGAGCTGCAGCTGTTCCCCGACTGGTACCTGGCCCGCCACCTCGGCGTGGAG
CTGGAGGGCGAGACGCTGGCCCGCTGGCAGCGGATCTGCGACCTGCTGGTACGCAGCGCGCTGGAGCAACCG
CGGGTGTTCGTCCATCGCGACTATATGCCGCGCAACCTGATGCTCAGCGAGCCCAACCCGGGCGTCCTCGAC
TTCCAGGACGCCCTGCACGGCCCGGTCACCTACGATGTCACCTGCCTGTACAAGGATGCCTTCGTCAGTTGG
CCGGAGCCGCGCGTGCATGCCGCGCTGAGTCGTTACTGGAAGAAGGCGACCTGGGCCGGCATCCCGCTGCCG
CCAAGCTTCGAGGACTTCCTCCGCGCCAGCGACCTGATGGGCGTGCAGCGCCACCTGAAGGTGATTGGCATC
TTCGCCCGTATTTGTCACCGCGACGGCAAGCCGCGCTACCTGGGTGACGTGCCACGCTTCTTCCGTTATCTG
GAAACCGCCGTGGCGCGCCGTCCCGAGCTGGCCGAACTGGGCGAGCTGCTGGCCTCGCTGCCGCAGGGAGCC
GAGGCATGA
Translation:
MSDDARFQQLNRWLDSCLPELFVAEGWGEVPPAELIPASSDASFRRYFRWQGGDRSLVVMDAPPPQEDCRPF
VKVAGLLAGAGVHVPRILAQDLENGFLLLSDLGRQTYLDVLHPGNADELFEPALDALIAFQKVDVAGVLPAY
DEAVLRRELQLFPDWYLARHLGVELEGETLARWQRICDLLVRSALEQPRVFVHRDYMPRNLMLSEPNPGVLD
FQDALHGPVTYDVTCLYKDAFVSWPEPRVHAALSRYWKKATWAGIPLPPSFEDFLRASDLMGVQRHLKVIGI
FARICHRDGKPRYLGDVPRFFRYLETAVARRPELAELGELLASLPQGAEA*
AnnotationID:1946GeneID:1937
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 11:11:01
Gene Name:
Confidence Code:3
GeneProduct:putative phosphotransferase
Cell Localization:()
Synonyms:PA0596
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3178
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases
CD-Length = 351 residues,  96.6% aligned
Score =  390 bits (1004), Expect = 1e-109
Identities = 171/352 (48%), Positives = 198/352 (56%), Gaps = 27/352 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3877




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21024




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38080




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1937_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1937
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
104744
                           gb|AAD22455.1|AF116284_1
                           (AF116284) unknown [Pseudomonas aeruginosa]
                           338
                           99.99
                           99.99
                           0
                           1796.0
     

     
     
3393
                           PA0596_tr
                           translation of PA0596
                           338
                           99.11
                           99.70
                           0
                           1781.0
     

     
     
104745
                           gb|AAG03985.1|AE004496_1
                           (AE004496) hypothetical protein PA0596 [Pseudomonas aeruginosa PAO1]
                           338
                           99.11
                           99.70
                           0
                           1781.0
     

     
     
104746
                           gb|AAO54097.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           66.27
                           79.47
                           3
                           1217.0
     

     
     
104747
                           gb|AAN66035.1|AE016233_1
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           339
                           65.48
                           75.51
                           1
                           1180.0
     

     






      

          
GC ORFID: 44939How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0596Glimmer Score: 

          
Start: 6470818Stop: 6471834

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0596 translation of PA0596Homolog Bit Score 690.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6682 (ORF: BLASTX 462.0), t_PA0596 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGATGATGCCCGTTTCCAGCAGCTGAATCGCTGGTTGGACTCTTGTTTGCCCGAGTTGTTCGTTGCC 
GAAGGTTGGGGGGAAGTGCCCCCCGCCGAACTGATCCCGGCCAGTAGCGACGCCAGCTTCCGTCGTTATTTC 
CGCTGGCAGGGAGGGGACCGCAGCCTGGTGGTGATGGACGCGCCGCCGCCCCAGGAAGACTGCCGACCGTTC 
GTCAAGGTCGCCGGACTGCTCGCCGGAGCCGGCGTGCATGTGCCGAGGATTCTCGCCCAGGATCTGGAGAAC 
GGTTTCCTGCTGCTCAGTGACCTGGGCCGGCAGACCTACCTCGACGTGCTTCATCCCGGAAATGCCGACGAG 
CTGTTCGAACCGGCCCTGGATGCGCTGATCGCCTTCCAGAAGGTCGATGTCGCCGGTGTCCTGCCTGCCTAC 
GACGAAGCGGTGCTGCGCCGCGAGCTGCAGCTGTTCCCCGACTGGTACCTGGCCCGCCACCTCGGCGTGGAG 
CTGGAGGGCGAGACGCTGGCCCGCTGGCAGCGGATCTGCGACCTGCTGGTACGCAGCGCGCTGGAGCAACCG 
CGGGTGTTCGTCCATCGCGACTATATGCCGCGCAACCTGATGCTCAGCGAGCCCAACCCGGGCGTCCTCGAC 
TTCCAGGACGCCCTGCACGGCCCGGTCACCTACGATGTCACCTGCCTGTACAAGGATGCCTTCGTCAGTTGG 
CCGGAGCCGCGCGTGCATGCCGCGCTGAGTCGTTACTGGAAGAAGGCGACCTGGGCCGGCATCCCGCTGCCG 
CCAAGCTTCGAGGACTTCCTCCGCGCCAGCGACCTGATGGGCGTGCAGCGCCACCTGAAGGTGATTGGCATC 
TTCGCCCGTATTTGTCACCGCGACGGCAAGCCGCGCTACCTGGGTGACGTGCCACGCTTCTTCCGTTATCTG 
GAAACCGCCGTGGCGCGCCGTCCCGAGCTGGCCGAACTGGGCGAGCTGCTGGCCTCGCTGCCGCAGGGAGCC 
GAGGCATGA