ViewGene

Locus Name:
GeneID:
Location:

GeneID:1935
TrivialName: PA14_65430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65430
PAO1 Ortholog Locus:PA4953
Sequence Length:1044
Protein Length:347
Start: 5830391
Stop: 5829348
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08338.1|AE004908_4 (AE004908) chemotaxis protein MotB [Pseudomonas aeruginosa PAO1]
Identities = 347/347 (100%), Positives = 347/347 (100%)
Sequence:
ATGGACAATAACCAGCCGATCATCGTCAAGCGCGTCAAGCGCTATGCCGCCGGCCACCACGGCGGCTCGTGG
AAGATCGCCTTCGCCGACTTCGCGACGGCGATGATGGCGTTCTTCCTGGTGCTCTGGCTGCTGTCTTCGGCC
ACCCCGGAGCAGAAGAAGGCGATTTCCGGATACTTCCAGGACCCCATCGGTTTCAGCGAAAGTGCCAGCCCC
TACGTCATCGACCTCGGCGGCACGCCGACGCCGGCGCCGGACAAGACCCTCAATCCGCAGGTCCAGGCCCAG
CCGGACTCCAACGAAAGCCGGATCAGCCCCGAGCAGGACCATCAGGTCAACGCCGACCAGGCCGAGAACCTC
GCCGAGCAGGTTGAGCGAGAGCGCCTGGCGCTGCTGCTGCAGGAGTTGCAGAACAAGGTCGACGAAAATCCG
ATGCTCAAGGACTTCAAGGACCAGATCCACTTCGAGATCACCCGCGACGGCCTGCGCATCCAGATCGTCGAC
GCCGCCAACCGGCCGATGTTCGACCTCGGCAGCGCGCGCCTGCAGCCGTATTTCGAGGACATCCTGCTGGCC
ATGGCCGAGACCATCCGCCAGGTGCCGAACAAGATCAGCATCAGCGGCCACACCGACGCCAAGCCCTATGCC
GGCAACGGCGACTTCGGCAACTGGGAGCTATCGGCCAATCGCGCCAACGCCGCGCGCCGTGCGCTGGTCGCC
GGCGGCTATCCGGAAGGGCAGATCGCCCAGGTTGTCGGATATGCCTCGGCACGCCTGTTCGACGACAAGGAC
CCGCTGAACCCGGTGAACCGGCGGATCGACATCGTGGTCCTGACCCGCAAGGCGCAGAAGGCCATCGAAGGC
GAGACCGGCGCTCCCGAAGCCAGCGCCCCCGCGGCTGCCCCGGGCGAGCAGCCGAAGCCGGCTGCCGAGGCA
CCGGCGGCGGGCGCGCAACCTTCGCTACCGGCGGACGAGGTGCAGAAGAAGCTCAACCTGTTCGACGACGGC
GGCAGCCTGAAGCTGGAGCAGATCAAGGGCGACTGA
Translation:
MDNNQPIIVKRVKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYFQDPIGFSESASP
YVIDLGGTPTPAPDKTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVERERLALLLQELQNKVDENP
MLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYFEDILLAMAETIRQVPNKISISGHTDAKPYA
GNGDFGNWELSANRANAARRALVAGGYPEGQIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKAQKAIEG
ETGAPEASAPAAAPGEQPKPAAEAPAAGAQPSLPADEVQKKLNLFDDGGSLKLEQIKGD*
AnnotationID:1944GeneID:1935
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 14:02:56
Gene Name:motB
Confidence Code:1
GeneProduct:chemotaxis protein MotB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1360
Secondary Functional Category(ies):Motility & Attachment
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70471.1|AE016688_10 (AE016792) motility protein, MotB family [Pseudomonas putida
           KT2440]
          Length = 346

 Score =  492 bits (1267), Expect = e-138
 Identities = 249/352 (70%), Positives = 292/352 (82%), Gaps = 15/352 (4%)

>gb|AAO58380.1| (AE016873) chemotaxis motB protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 341

 Score =  441 bits (1134), Expect = e-123
 Identities = 225/344 (65%), Positives = 271/344 (78%), Gaps = 20/344 (5%)

Structural Features:
COG1360, MotB, Flagellar motor protein [Cell motility and secretion]
CD-Length = 244 residues, 100.0% aligned
Score =  188 bits (479), Expect = 7e-49
Identities = 93/277 (33%), Positives = 143/277 (51%), Gaps = 36/277 (12%)

Genomic Context:
Comment:
wrt naming of motAB and motCD genes, PMID: 15629949 (Toutain, Zegans and O’Toole, 2005) agrees with 
PAO1 and PA14 annotations, but disagrees with PMID 15375113 (Doyle, Hawkins and McCarter, 2004).
ReferenceID:3873
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21020
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35096
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1935_cdd.html
URL:
ReferenceID:35893
Author/Investigator(s): Kato J, Nakamura T, Kuroda A, Ohtake H.
Title: Cloning and characterization of chemotaxis genes in Pseudomonas aeruginosa.
PubMed: 10052136
MedLine:
Source:
Biosci Biotechnol Biochem. 1999 Jan;63(1):155-61.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10052136
ReferenceID:35896
Author/Investigator(s): Stamm LV, Bergen HL.
Title: Molecular characterization of a flagellar (fla) operon in the oral spirochete Treponema denticola ATCC 35405.
PubMed: 10481082
MedLine:
Source:
FEMS Microbiol Lett. 1999 Oct 1;179(1):31-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10481082
ReferenceID:38306
Author/Investigator(s): Toutain CM, Zegans ME, O'Toole GA.
Title: Evidence for two flagellar stators and their role in the motility of Pseudomonas aeruginosa.
PubMed: Toutain CM, Zegans ME, O'Toole
MedLine:
Source:
J Bacteriol. 2005 Jan;187(2):771-7.
Reference Type:Journal
Data:
URL:
ReferenceID:38307
Author/Investigator(s): Doyle TB, Hawkins AC, McCarter LL.
Title: The complex flagellar torque generator of Pseudomonas aeruginosa.
PubMed: 15375113
MedLine:
Source:
J Bacteriol. 2004 Oct;186(19):6341-50.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:1935

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3392 PA4953_tr translation of PA4953 347 99.99 99.99 0 1783.0
104729 gb|AAG08338.1|AE004908_4 (AE004908) chemotaxis protein MotB [Pseudomonas aeruginosa PAO1] 347 99.99 99.99 0 1783.0
104730 gb|AAN70471.1|AE016688_10 (AE016792) motility protein, MotB family [Pseudomonas putida KT2440] 361 70.63 82.54 29 1287.0
104731 gb|AAO58380.1| (AE016873) chemotaxis motB protein [Pseudomonas syringae pv. tomato str. DC3000] 355 63.94 77.74 22 1152.0
104732 gb|AAD33691.1|AF136403_3 (AF136403) RpmB [Pseudomonas aeruginosa] 347 40.92 40.92 201 726.0
GC ORFID: 44937How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4953Glimmer Score:
Start: 5094072Stop: 5093029
Length: 1044
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4953 translation of PA4953Homolog Bit Score 691.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3420 (ORF: BLASTX 444.0), t_PA4953 (ORF: GLIMMER)
GC ORF Sequence
ATGGACAATAACCAGCCGATCATCGTCAAGCGCGTCAAGCGCTATGCCGCCGGCCACCACGGCGGCTCGTGG
AAGATCGCCTTCGCCGACTTCGCGACGGCGATGATGGCGTTCTTCCTGGTGCTCTGGCTGCTGTCTTCGGCC
ACCCCGGAGCAGAAGAAGGCGATTTCCGGATACTTCCAGGACCCCATCGGTTTCAGCGAAAGTGCCAGCCCC
TACGTCATCGACCTCGGCGGCACGCCGACGCCGGCGCCGGACAAGACCCTCAATCCGCAGGTCCAGGCCCAG
CCGGACTCCAACGAAAGCCGGATCAGCCCCGAGCAGGACCATCAGGTCAACGCCGACCAGGCCGAGAACCTC
GCCGAGCAGGTTGAGCGAGAGCGCCTGGCGCTGCTGCTGCAGGAGTTGCAGAACAAGGTCGACGAAAATCCG
ATGCTCAAGGACTTCAAGGACCAGATCCACTTCGAGATCACCCGCGACGGCCTGCGCATCCAGATCGTCGAC
GCCGCCAACCGGCCGATGTTCGACCTCGGCAGCGCGCGCCTGCAGCCGTATTTCGAGGACATCCTGCTGGCC
ATGGCCGAGACCATCCGCCAGGTGCCGAACAAGATCAGCATCAGCGGCCACACCGACGCCAAGCCCTATGCC
GGCAACGGCGACTTCGGCAACTGGGAGCTATCGGCCAATCGCGCCAACGCCGCGCGCCGTGCGCTGGTCGCC
GGCGGCTATCCGGAAGGGCAGATCGCCCAGGTTGTCGGATATGCCTCGGCACGCCTGTTCGACGACAAGGAC
CCGCTGAACCCGGTGAACCGGCGGATCGACATCGTGGTCCTGACCCGCAAGGCGCAGAAGGCCATCGAAGGC
GAGACCGGCGCTCCCGAAGCCAGCGCCCCCGCGGCTGCCCCGGGCGAGCAGCCGAAGCCGGCTGCCGAGGCA
CCGGCGGCGGGCGCGCAACCTTCGCTACCGGCGGACGAGGTGCAGAAGAAGCTCAACCTGTTCGACGACGGC
GGCAGCCTGAAGCTGGAGCAGATCAAGGGCGACTGA