ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1934

TrivialName: PA14_61940

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_61940

PAO1 Ortholog Locus: PA4682

Sequence Length: 1047

Protein Length: 348

Start: 5523608

Stop: 5522562

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08069.1|AE004881_12 (AE004881) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 347/348 (99%), Positives = 347/348 (99%)

Sequence:

ATGTCCCGTCGTCTGCCCTTCCTGCTGCGTTGCGCGCTGTTCTGCGGCGCCGGTCTGCTGGCTGCCACCGCC
CAGGCGAGGATGGAGTCGCTGGACGACGACCAGCTTTCCGACGTGGTCGGCCAGGCCTTCATCAACCTCACC
ACCGACGCCGCCAACGGACTGAACTTCACCCGCATCAACTTCGGCGCCGACATCGAGACCCAACTGAACATG
AAGAAGCTGCAGTTGGGCCAGTACAACCGCAGCGGCGAGCTTGCCGGCAGTGCCGACATCGCCATCGACAAC
TTCGCCCTGGGCACGGTCAACGACGCCACCGGCGCGATCAACCCGTTCCTCATCAGCAATCCCTACATCGAG
TTCGCCTACGACGGCAGCAAGATGGTCGGCATCCGTATCGGTTTCGGCGAAGCCAAGGGCTACCTCTCGGGC
GATATCAAGACCCTCACCGGCAACGTGCCGGTGGACCTGTACGGCACCGGCAGCCAGTTGGGAGGCAGCATT
TCCTGCGGCCTGCTGGCCCTCGACTGCCTGGCGGCGAAGACCGCCATCACTCTCACCGGCAGCTCTCAGTAC
ACCGCCCAGGCCGAACTGGTGAACAGCTCCGGCAACCCCGACCCGATCCGCGCTGCCATGATCGGCCTGAAG
AACGGCACGGCCCTGGACATGCACGACAGCACCATCATCGGCAGCCTGGTGAACGTCCTGCTGCCCTTCCTG
ACCTCCAACGACTGCAAGCTGATGGGCGCCCAGACCTGCTTCAACCTGGCCCAGTACCAGTCGTTCCCGATC
GGCACCGTGGATCCGAACAACGCGCAGAACTTCATCGACTCGTCGAAAGGCTTCTTCATCTCGATGCAGAGC
CAGAACGTCCAGTGGCGCGACCAGCAGGATCCCTCCAAGCTGGTCGCCGCGCTGGCCGGTGCCTTCCTCAAC
ATGTCGCGCAACGCCGATGGAACGGCGCCGATCAAGGTCGACTTCGGTCAGGCCTTCAATGGCATTCCACGG
CAGGACACCTGCCTGGGCGGCCTGAACAAGGGCTGCTGA

Translation:

MSRRLPFLLRCALFCGAGLLAATAQARMESLDDDQLSDVVGQAFINLTTDAANGLNFTRINFGADIETQLNM
KKLQLGQYNRSGELAGSADIAIDNFALGTVNDATGAINPFLISNPYIEFAYDGSKMVGIRIGFGEAKGYLSG
DIKTLTGNVPVDLYGTGSQLGGSISCGLLALDCLAAKTAITLTGSSQYTAQAELVNSSGNPDPIRAAMIGLK
NGTALDMHDSTIIGSLVNVLLPFLTSNDCKLMGAQTCFNLAQYQSFPIGTVDPNNAQNFIDSSKGFFISMQS
QNVQWRDQQDPSKLVAALAGAFLNMSRNADGTAPIKVDFGQAFNGIPRQDTCLGGLNKGC*

AnnotationID:1943 GeneID:1934

AnnotatorUID: diggins

Modification Date/Time: 2005-03-08 08:08:59

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA4682

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:3871

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21018

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1934

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3391 PA4682_tr translation of PA4682 348 99.71 99.71 0 1783.0

104728 gb|AAG08069.1|AE004881_12 (AE004881) hypothetical protein PA4682 [Pseudomonas aeruginosa PAO1] 348 99.71 99.71 0 1783.0

GC ORFID: `44936`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4682`	Glimmer Score:
Start: `4787288`	Stop: `4786242`
Length: `1047`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4682 translation of PA4682`	Homolog Bit Score `691.0`
Other Homologs: `t_PA4682 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCCGTCGTCTGCCCTTCCTGCTGCGTTGCGCGCTGTTCTGCGGCGCCGGTCTGCTGGCTGCCACCGCC CAGGCGAGGATGGAGTCGCTGGACGACGACCAGCTTTCCGACGTGGTCGGCCAGGCCTTCATCAACCTCACC ACCGACGCCGCCAACGGACTGAACTTCACCCGCATCAACTTCGGCGCCGACATCGAGACCCAACTGAACATG AAGAAGCTGCAGTTGGGCCAGTACAACCGCAGCGGCGAGCTTGCCGGCAGTGCCGACATCGCCATCGACAAC TTCGCCCTGGGCACGGTCAACGACGCCACCGGCGCGATCAACCCGTTCCTCATCAGCAATCCCTACATCGAG TTCGCCTACGACGGCAGCAAGATGGTCGGCATCCGTATCGGTTTCGGCGAAGCCAAGGGCTACCTCTCGGGC GATATCAAGACCCTCACCGGCAACGTGCCGGTGGACCTGTACGGCACCGGCAGCCAGTTGGGAGGCAGCATT TCCTGCGGCCTGCTGGCCCTCGACTGCCTGGCGGCGAAGACCGCCATCACTCTCACCGGCAGCTCTCAGTAC ACCGCCCAGGCCGAACTGGTGAACAGCTCCGGCAACCCCGACCCGATCCGCGCTGCCATGATCGGCCTGAAG AACGGCACGGCCCTGGACATGCACGACAGCACCATCATCGGCAGCCTGGTGAACGTCCTGCTGCCCTTCCTG ACCTCCAACGACTGCAAGCTGATGGGCGCCCAGACCTGCTTCAACCTGGCCCAGTACCAGTCGTTCCCGATC GGCACCGTGGATCCGAACAACGCGCAGAACTTCATCGACTCGTCGAAAGGCTTCTTCATCTCGATGCAGAGC CAGAACGTCCAGTGGCGCGACCAGCAGGATCCCTCCAAGCTGGTCGCCGCGCTGGCCGGTGCCTTCCTCAAC ATGTCGCGCAACGCCGATGGAACGGCGCCGATCAAGGTCGACTTCGGTCAGGCCTTCAATGGCATTCCACGG CAGGACACCTGCCTGGGCGGCCTGAACAAGGGCTGCTGA