ViewGene
Locus Name:
GeneID:
Location:

GeneID:1933
TrivialName: PA14_57060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57060
PAO1 Ortholog Locus:PA4390
Sequence Length:1008
Protein Length:335
Start: 5084421
Stop: 5083414
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07778.1|AE004854_14 (AE004854) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/335 (99%), Positives = 334/335 (99%)
Sequence:
GTGCTCATGTTGTCGAGAATCCTGCTGTGCCTCGCTGCCCTTGCAAGTTCCACCTCTGCCCTTGCCGATACG
GTCTGGATGAAGAACGGTGACCGCCTTACCGGCAAGATCACCCTGTTCGACGGCGGCAAGCTGCTGCTGAAG
ACCGACTATGGCGGCGACATCACGCTCAAGTGGGACAAGATCTCCACCTTCGAGAGCGAGCAGAACCTGCTG
GTCAAGCAGGATGCCGAGACCGGCGAGCATTCCAAGGGCATCAGGGCCGCCGGGCCGGGCCAGGTGACCCTG
GTCAATGGCGAGCCGAAGACCGTGGAGCTGGCCAGCATCCAGCAGATGATGCCGCCCAAGCCGATCCTCCAG
GACTGGGTATGGAACGGCAACGTCGATTTCTCGCTGGACCGCAAGCAGGCCGAGAACGATGTGTCCGACTAC
GACATCGATTTCAAGACCAACGCCCGCCACGGACTCTGGCGCCACAACGTGCAGGGCGAGTACAACCGCGAG
AAGAAGAACGGCCTGGTCAGCACCGACAATTATTCCGGCCAGTACGCGCTGGACCGCTTCATCGACGACCAC
TGGTTCTGGCAGGGCCAGGTCGCCTACAAGCGCGACATGATCGAGGACCTGGCGAAGAAGCGTACCGTCGGT
ACCGGCCCTGGCTACCAGTTCTGGGACAACGAGCTGGGCGCGTTCTCCATTGCCACCCTGGTCAACCGCAAC
GACTACGAGTTCGCCGACGGCGAGAAGGAGCACTTCTATTCGTCGAGCTTCAAGTGGGACTACAACCGCTAC
CTGCTGGCCAAGCAGTTCGAGCTGTTCACCAACGGCGAGGTCAGCAAGCCGCTGCAATCCGGCCTGGACTAC
GAGCTGCAGACCGAGGCGGGGATCCGCTACAAGCTGACCAGTTGGGCTTCGCTGAGCATGAAGGCGGAATGG
GACAAGTTCAGCGGCAACGACGGCAACGTCAACCAGCGCCGCTATACCTTCGGCCTCGGGGTCGGCTGGTAA
Translation:
MLMLSRILLCLAALASSTSALADTVWMKNGDRLTGKITLFDGGKLLLKTDYGGDITLKWDKISTFESEQNLL
VKQDAETGEHSKGIRAAGPGQVTLVNGEPKTVELASIQQMMPPKPILQDWVWNGNVDFSLDRKQAENDVSDY
DIDFKTNARHGLWRHNVQGEYNREKKNGLVSTDNYSGQYALDRFIDDHWFWQGQVAYKRDMIEDLAKKRTVG
TGPGYQFWDNELGAFSIATLVNRNDYEFADGEKEHFYSSSFKWDYNRYLLAKQFELFTNGEVSKPLQSGLDY
ELQTEAGIRYKLTSWASLSMKAEWDKFSGNDGNVNQRRYTFGLGVGW*
AnnotationID:1942GeneID:1933
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4390
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21016




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1933
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3389
                           PA4390_tr
                           translation of PA4390
                           335
                           99.40
                           99.70
                           0
                           1784.0
     

     
     
104724
                           gb|AAG07778.1|AE004854_14
                           (AE004854) hypothetical protein PA4390 [Pseudomonas aeruginosa PAO1]
                           335
                           99.10
                           99.70
                           0
                           1781.0
     

     
     
104726
                           gb|AAO57831.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           337
                           59.34
                           77.44
                           4
                           1115.0
     

     
     
104725
                           gb|AAN66980.1|AE016326_6
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           375
                           54.66
                           70.13
                           40
                           1131.0
     

     
     
3390
                           PA4391_tr
                           translation of PA4391
                           335
                           45.07
                           62.38
                           2
                           818.0
     

     






      

          
GC ORFID: 44935How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4390Glimmer Score: 

          
Start: 4348097Stop: 4347090

          
Length: 1008


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4390 translation of PA4390Homolog Bit Score 691.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2053 (ORF: BLASTX 426.0), t_PA4391 (ORF: BLASTX 319.0), t_PA4390 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTCATGTTGTCGAGAATCCTGCTGTGCCTCGCTGCCCTTGCAAGTTCCACCTCTGCCCTTGCCGATACG 
GTCTGGATGAAGAACGGTGACCGCCTTACCGGCAAGATCACCCTGTTCGACGGCGGCAAGCTGCTGCTGAAG 
ACCGACTATGGCGGCGACATCACGCTCAAGTGGGACAAGATCTCCACCTTCGAGAGCGAGCAGAACCTGCTG 
GTCAAGCAGGATGCCGAGACCGGCGAGCATTCCAAGGGCATCAGGGCCGCCGGGCCGGGCCAGGTGACCCTG 
GTCAATGGCGAGCCGAAGACCGTGGAGCTGGCCAGCATCCAGCAGATGATGCCGCCCAAGCCGATCCTCCAG 
GACTGGGTATGGAACGGCAACGTCGATTTCTCGCTGGACCGCAAGCAGGCCGAGAACGATGTGTCCGACTAC 
GACATCGATTTCAAGACCAACGCCCGCCACGGACTCTGGCGCCACAACGTGCAGGGCGAGTACAACCGCGAG 
AAGAAGAACGGCCTGGTCAGCACCGACAATTATTCCGGCCAGTACGCGCTGGACCGCTTCATCGACGACCAC 
TGGTTCTGGCAGGGCCAGGTCGCCTACAAGCGCGACATGATCGAGGACCTGGCGAAGAAGCGTACCGTCGGT 
ACCGGCCCTGGCTACCAGTTCTGGGACAACGAGCTGGGCGCGTTCTCCATTGCCACCCTGGTCAACCGCAAC 
GACTACGAGTTCGCCGACGGCGAGAAGGAGCACTTCTATTCGTCGAGCTTCAAGTGGGACTACAACCGCTAC 
CTGCTGGCCAAGCAGTTCGAGCTGTTCACCAACGGCGAGGTCAGCAAGCCGCTGCAATCCGGCCTGGACTAC 
GAGCTGCAGACCGAGGCGGGGATCCGCTACAAGCTGACCAGTTGGGCTTCGCTGAGCATGAAGGCGGAATGG 
GACAAGTTCAGCGGCAACGACGGCAACGTCAACCAGCGCCGCTATACCTTCGGCCTCGGGGTCGGCTGGTAA