ViewGene

Locus Name:
GeneID:
Location:

GeneID:1931
TrivialName: PA14_18810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18810
PAO1 Ortholog Locus:PA3519
Sequence Length:1038
Protein Length:345
Start: 1621282
Stop: 1622319
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06907.1|AE004772_5 (AE004772) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 342/345 (99%), Positives = 343/345 (99%)
Sequence:
ATGACTTCAAATCCGTTACAGCAATGCTGCAATTCTTCCTCCGATATGAATATCCGCCCCCAGCGGACAATG
TCGGAACCTGCCCGAAATGCATCGGTTCTCCTGGCTGAAGCCTTGAAACCGGGTGCCTCCCTGGACCAGATC
ACGCTCGCGCTCGAGGCGATTCTCGCGGTCACGGCCAAAGGCCTGGGCGGTGATGCTTCGGCTTACGCGCAG
TACCAGGCGTTGCTCCTGGAACTGCACGTAGGCAGCGATCCGCATACGGAGCCGACCCGCCGCTGGATGGCG
AGCCAGGTCTACCTGGTCGAGGATCGTTTCGCTCCCGAGCCGGCCGGTTTCAGCGCCGTCCCGGTGGAGGAG
TTCCGCAAGAAGGTCGACGCCGAGATCGAGGCGCGCAGCCGGGTGCGCCATCCCATGTCGGTCCACCTGTTC
CAGGGCACGCCGCCGGTCGAGGACGTGCGCTTCTTCCTGGAACACCATTGGGTCCGTTCCTACAACTTCTAC
AGCCTCCTGGCGGAGCTGGCCTTCCGCTTCGAAAACATCGAGGACGCCTCGGTGTTCTACCGCAACCTCTAC
GGCGAGGCCGGGGCGGAGACGCCGGAGCGCTCGCACCCCGCGTTGCTGTCCCACCTGATGACCTACTTCGAC
ATTCCGCTGCGCATCGATTTCCCGGCGCTGCATCCGCTGGAGAAGGCTTACCTCAACAACCGTATCCGTTGC
GTGCGGCACACCGATGTCGCCTGGGGCCTTGCGCTCCTGTACGCGGTCGAGTCGGTGAGCTGCGTCAACCAC
CGGCGCATCTACGAACTCCTGCAGCGCCTGGGCGTGCCCGAGCAACCCAGCGAGTTCCATCGCCTGCACGGC
ACCCAGGACGAGATCGATACCGAGGAGATGTGGGCGCTGATCGCCAAGTTCGCGCCGAGCGAAGACTTCCAG
CGCAAGTTCATGCAGTCGCTGGCGCGCCACTTCGAAATCAACCGGGCCTACTTCGACCTGCTCTGGGAGCAG
ATGCAGGCGAATTCCCTGGCCATGGCCTGA
Translation:
MTSNPLQQCCNSSSDMNIRPQRTMSEPARNASVLLAEALKPGASLDQITLALEAILAVTAKGLGGDASAYAQ
YQALLLELHVGSDPHTEPTRRWMASQVYLVEDRFAPEPAGFSAVPVEEFRKKVDAEIEARSRVRHPMSVHLF
QGTPPVEDVRFFLEHHWVRSYNFYSLLAELAFRFENIEDASVFYRNLYGEAGAETPERSHPALLSHLMTYFD
IPLRIDFPALHPLEKAYLNNRIRCVRHTDVAWGLALLYAVESVSCVNHRRIYELLQRLGVPEQPSEFHRLHG
TQDEIDTEEMWALIAKFAPSEDFQRKFMQSLARHFEINRAYFDLLWEQMQANSLAMA*
AnnotationID:1940GeneID:1931
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 13:01:42
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3519
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3865
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21012
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1931

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3387 PA3519_tr translation of PA3519 345 99.13 99.42 0 1784.0
104619 gb|AAG06907.1|AE004772_5 (AE004772) hypothetical protein PA3519 [Pseudomonas aeruginosa PAO1] 345 99.13 99.42 0 1784.0
GC ORFID: 44933How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3519Glimmer Score:
Start: 3332652Stop: 3331615
Length: 1038
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3519 translation of PA3519Homolog Bit Score 691.0
Other Homologs: t_PA3519 (ORF: GLIMMER)
GC ORF Sequence
ATGACTTCAAATCCGTTACAGCAATGCTGCAATTCTTCCTCCGATATGAATATCCGCCCCCAGCGGACAATG
TCGGAACCTGCCCGAAATGCATCGGTTCTCCTGGCTGAAGCCTTGAAACCGGGTGCCTCCCTGGACCAGATC
ACGCTCGCGCTCGAGGCGATTCTCGCGGTCACGGCCAAAGGCCTGGGCGGTGATGCTTCGGCTTACGCGCAG
TACCAGGCGTTGCTCCTGGAACTGCACGTAGGCAGCGATCCGCATACGGAGCCGACCCGCCGCTGGATGGCG
AGCCAGGTCTACCTGGTCGAGGATCGTTTCGCTCCCGAGCCGGCCGGTTTCAGCGCCGTCCCGGTGGAGGAG
TTCCGCAAGAAGGTCGACGCCGAGATCGAGGCGCGCAGCCGGGTGCGCCATCCCATGTCGGTCCACCTGTTC
CAGGGCACGCCGCCGGTCGAGGACGTGCGCTTCTTCCTGGAACACCATTGGGTCCGTTCCTACAACTTCTAC
AGCCTCCTGGCGGAGCTGGCCTTCCGCTTCGAAAACATCGAGGACGCCTCGGTGTTCTACCGCAACCTCTAC
GGCGAGGCCGGGGCGGAGACGCCGGAGCGCTCGCACCCCGCGTTGCTGTCCCACCTGATGACCTACTTCGAC
ATTCCGCTGCGCATCGATTTCCCGGCGCTGCATCCGCTGGAGAAGGCTTACCTCAACAACCGTATCCGTTGC
GTGCGGCACACCGATGTCGCCTGGGGCCTTGCGCTCCTGTACGCGGTCGAGTCGGTGAGCTGCGTCAACCAC
CGGCGCATCTACGAACTCCTGCAGCGCCTGGGCGTGCCCGAGCAACCCAGCGAGTTCCATCGCCTGCACGGC
ACCCAGGACGAGATCGATACCGAGGAGATGTGGGCGCTGATCGCCAAGTTCGCGCCGAGCGAAGACTTCCAG
CGCAAGTTCATGCAGTCGCTGGCGCGCCACTTCGAAATCAACCGGGCCTACTTCGACCTGCTCTGGGAGCAG
ATGCAGGCGAATTCCCTGGCCATGGCCTGA