ViewGene
Locus Name:
GeneID:
Location:

GeneID:1930
TrivialName: PA14_44850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44850
PAO1 Ortholog Locus:PA1515
Sequence Length:999
Protein Length:332
Start: 3996583
Stop: 3997581
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04904.1|AE004580_4 (AE004580) allantoicase [Pseudomonas aeruginosa PAO1]
Identities = 325/332 (97%), Positives = 328/332 (98%)
Sequence:
ATGAACGCCAAACACGCGCCCTTCCGCCACTACCTCGACCTCGCCGACGCGCGCCTGGGCAGCCAGGTGGTC
GCCGTCAGCGACGAATGGTTCGCCCCGGCCAGCCGCATGCTGCAGGCCGGCGAACCGGTGTGGAAGGAAGGC
GTGTTCGACGACAGCGGCAAGTGGATGGACGGCTGGGAAACCCGCCGCAAGCGCTTCGAGGGCCATGACCAG
GCGGTGATCCGCCTGGGTGTGCCGGGCGTGCTGAAGGGCGTCGACATCGACACCCGCTTCTTCACCGGCAAC
CATCCGCCGGCGGCTTCCCTGGATGGCTGCTTCTGCACCGAAGGCGACCCGGACGACAGCACGTCCTGGAGC
GAAGTGCTGCCGGCGGTGGGGCTGCAGGGCGATAGCCATCACTACCACCCGATAGACGACGAACGTCCCTGG
ACCCACCTGCGTCTGAACATCTACCCGGACGGCGGTATCGCCCGCCTGCGCCTCTATGGCGTGCCCTACCGC
GACTGGAGCAGCCTGCCGCCGGGAACGGCGCTCGACCTGGCCGCAGCGGTCAACGGCGGCCGGGCGCTGGCC
TGTTCCGACCAGCATTTCGGACGCATGGGCAACCTGCTCAACCCCGGACGTGCCATCAACATGGGCGACGGC
TGGGAAACCGGCCGCCGCCGCACGCCGGGCCACGACTGGGTGATCGTCGCCCTCGGCCATCCCGGCAGCATC
GAGGCGGCGGTCGTCGATACCTTGCACTTCAAGGGCAACTATCCGGAAAGCTGCAGCATTCAGGCCGCCTTC
GTGGAAGGCGGAAACGAGGCCCGGATCGAGGCACAGAGCCTCTTCTGGCGCGAGCTGCTGCCAGCGCAGAAG
CTGGAAATGCACCAGGAACACCGGTTCGAGCGGCACCTCAACGCCCTCGGCCCGATCACCCATGTACGCCTG
AACATCTTTCCCGACGGCGGCGTCAGCCGCCTGCGCCTGTTCGGCAGCCCACAATTACCGTGA
Translation:
MNAKHAPFRHYLDLADARLGSQVVAVSDEWFAPASRMLQAGEPVWKEGVFDDSGKWMDGWETRRKRFEGHDQ
AVIRLGVPGVLKGVDIDTRFFTGNHPPAASLDGCFCTEGDPDDSTSWSEVLPAVGLQGDSHHYHPIDDERPW
THLRLNIYPDGGIARLRLYGVPYRDWSSLPPGTALDLAAAVNGGRALACSDQHFGRMGNLLNPGRAINMGDG
WETGRRRTPGHDWVIVALGHPGSIEAAVVDTLHFKGNYPESCSIQAAFVEGGNEARIEAQSLFWRELLPAQK
LEMHQEHRFERHLNALGPITHVRLNIFPDGGVSRLRLFGSPQLP*
AnnotationID:1939GeneID:1930
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 19:07:18
Gene Name:alc
Confidence Code:2
GeneProduct:allantoicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03561
Secondary Functional Category(ies):
EC Number:3.5.3.4
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57137.1| (AE016869) allantoicase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 331

 Score =  496 bits (1276), Expect = e-139
 Identities = 217/327 (66%), Positives = 273/327 (83%)

>emb|CAD17062.1| (AL646074) PUTATIVE ALLANTOICASE (ALLANTOINE AMIDINOHYDROLASE)
           PROTEIN [Ralstonia solanacearum]
          Length = 336

 Score =  383 bits (984), Expect = e-106
 Identities = 178/320 (55%), Positives = 225/320 (70%)

>emb|CAC49187.1| (AL603644) putative allantoicase protein [Sinorhizobium meliloti]
          Length = 340

 Score =  317 bits (813), Expect = 5e-86
 Identities = 155/320 (48%), Positives = 213/320 (66%), Gaps = 7/320 (2%)






 
Structural Features:
pfam03561, Allantoicase, Allantoicase repeat. 
CD-Length = 149 residues, 100.0% aligned
Score =  212 bits (541), Expect = 5e-56
Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 4/149 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3863




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21010




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37331




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1930_cdd.html


    		




 
URL:

















    ReferenceID:38109




  
Author/Investigator(s):
        Lee H, Fu YH, Marzluf GA.





  
Title:
        Nucleotide sequence and DNA recognition elements of alc, the structural gene which encodes allantoicase, a purine catabolic enzyme of Neurospora crassa.




  
PubMed:
        2148685


MedLine:
        




    
Source:
Biochemistry. 1990 Sep 18;29(37):8779-87.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=91104776&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:1930
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3386
                           PA1515_tr
                           translation of PA1515
                           332
                           97.89
                           98.79
                           0
                           1783.0
     

     
     
104614
                           gb|AAG04904.1|AE004580_4
                           (AE004580) allantoicase [Pseudomonas aeruginosa PAO1]
                           332
                           97.89
                           98.79
                           0
                           1783.0
     

     
     
104615
                           gb|AAO57137.1|
                           (AE016869) allantoicase [Pseudomonas syringae pv. tomato str. DC3000]
                           332
                           65.36
                           82.22
                           1
                           1272.0
     

     
     
104616
                           emb|CAD17062.1|
                           (AL646074) PUTATIVE ALLANTOICASE (ALLANTOINE AMIDINOHYDROLASE) PROTEIN [Ralstonia solanacearum]
                           338
                           52.95
                           67.75
                           8
                           977.0
     

     
     
104617
                           emb|CAC49187.1|
                           (AL603644) putative allantoicase protein [Sinorhizobium meliloti]
                           358
                           44.69
                           60.61
                           44
                           817.0
     

     






      

          
GC ORFID: 44932How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1515Glimmer Score: 

          
Start: 957326Stop: 956328

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1515 translation of PA1515Homolog Bit Score 691.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene589 (ORF: BLASTX 499.0), t_PA1515 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCAAACACGCGCCCTTCCGCCACTACCTCGACCTCGCCGACGCGCGCCTGGGCAGCCAGGTGGTC 
GCCGTCAGCGACGAATGGTTCGCCCCGGCCAGCCGCATGCTGCAGGCCGGCGAACCGGTGTGGAAGGAAGGC 
GTGTTCGACGACAGCGGCAAGTGGATGGACGGCTGGGAAACCCGCCGCAAGCGCTTCGAGGGCCATGACCAG 
GCGGTGATCCGCCTGGGTGTGCCGGGCGTGCTGAAGGGCGTCGACATCGACACCCGCTTCTTCACCGGCAAC 
CATCCGCCGGCGGCTTCCCTGGATGGCTGCTTCTGCACCGAAGGCGACCCGGACGACAGCACGTCCTGGAGC 
GAAGTGCTGCCGGCGGTGGGGCTGCAGGGCGATAGCCATCACTACCACCCGATAGACGACGAACGTCCCTGG 
ACCCACCTGCGTCTGAACATCTACCCGGACGGCGGTATCGCCCGCCTGCGCCTCTATGGCGTGCCCTACCGC 
GACTGGAGCAGCCTGCCGCCGGGAACGGCGCTCGACCTGGCCGCAGCGGTCAACGGCGGCCGGGCGCTGGCC 
TGTTCCGACCAGCATTTCGGACGCATGGGCAACCTGCTCAACCCCGGACGTGCCATCAACATGGGCGACGGC 
TGGGAAACCGGCCGCCGCCGCACGCCGGGCCACGACTGGGTGATCGTCGCCCTCGGCCATCCCGGCAGCATC 
GAGGCGGCGGTCGTCGATACCTTGCACTTCAAGGGCAACTATCCGGAAAGCTGCAGCATTCAGGCCGCCTTC 
GTGGAAGGCGGAAACGAGGCCCGGATCGAGGCACAGAGCCTCTTCTGGCGCGAGCTGCTGCCAGCGCAGAAG 
CTGGAAATGCACCAGGAACACCGGTTCGAGCGGCACCTCAACGCCCTCGGCCCGATCACCCATGTACGCCTG 
AACATCTTTCCCGACGGCGGCGTCAGCCGCCTGCGCCTGTTCGGCAGCCCACAATTACCGTGA