ViewGene

Locus Name:
GeneID:
Location:

GeneID:193
TrivialName: PA14_41670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41670
PAO1 Ortholog Locus:PA1770
Sequence Length:2376
Protein Length:791
Start: 3720636
Stop: 3718261
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05159.1|AE004602_10 (AE004602) phosphoenolpyruvate synthase [Pseudomonas aeruginosa PAO1]
Identities = 791/791 (100%), Positives = 791/791 (100%)
Sequence:
TTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTAGAGCATGTGGGGGGCAAGAACGCA
TCCCTCGGCGAGATGATCAGCAACCTGGCCGGTGCCGGCGTTTCCGTACCCGGCGGATTTGCCACCACCGCC
CAGGCCTACCGTGACTTCCTCGAGCAGAGTGGCCTCAACGACCGTATCCACGCGGCCCTGGACGCCCTGGAC
GTCGACGACGTCAACGCCCTGGCCAAGACCGGCGCGCAGATCCGCCAGTGGGTGATGGAAGCCGAGTTCCCG
GCCCGTCTCGACAGCGAGATCCGCCAGGCCTTCGCCGCCCTGGCCAACGGCAACGACAACCTCGCCGTGGCA
GTGCGTTCCTCCGCTACCGCCGAAGACCTTCCGGACGCCTCGTTCGCCGGCCAGCAGGAAACCTTCCTCAAT
ATCCGCGGCGTGGACAATGTGATCCGCGCAGCAAAAGAGGTCTTTGCCTCCCTGTTCAACGACCGCGCCATC
GCCTACCGCGTGCACCAGGGCTTCGATCACAAGCTGGTCGCCTTGTCCGCCGGCGTGCAGCGCATGGTCCGC
TCGGAAACCGGCACCGCCGGGGTGATGTTCACCCTGGACACCGAATCCGGCTTCCGCGACGTGGTCTTCATC
ACCGGTGCCTACGGCCTGGGCGAGACCGTGGTTCAGGGCGCGGTGAACCCCGACGAGTTCTACGTCCACAAG
CCGACCTTGGAAGCCGGGCGTCCGGCCATCCTGCGCCGCAACCTGGGTAGCAAGGCGATCAAGATGATCTAC
GGCGACGAAGCCAAGGCCGGTCGCTCGGTCAAGGTAGTGGACGTCGATCGCGCCGATCGCGCCCGCTTCGCC
CTGAGCGACGCCGAGGTCACCGAGCTGGCCAAGCAGGCCATGATCATCGAGAAGCACTATGGCCGCCCGATG
GACATCGAATGGGCCAAGGACGGTGACGACGGCAAGCTGTACATCGTCCAGGCACGCCCGGAAACCGTGAAG
AGCCGCGCCAGCGCCACGGTCATGGAGCGCTACCTGCTGAAAGAGAAGGGGACCGTCCTGGTGGAAGGACGT
GCCATCGGCCAGCGCATCGGTGCCGGTCCGGTCAAGGTGATCAACGACGTGTCGGAAATGGACAAGGTCCAA
CCGGGTGACGTCCTGGTCTCCGACATGACCGACCCGGACTGGGAGCCGGTGATGAAGCGCGCCAGCGCCATC
GTCACCAACCGCGGCGGGCGTACCTGCCACGCGGCGATCATCGCTCGCGAACTGGGCATCCCGGCGGTGGTC
GGTTGCGGCAACGCCACCCAGATCCTGCAGGATGGGCAGGGGGTGACCGTTTCCTGTGCCGAAGGCGATACC
GGCTTCATCTTCGAAGGCGAACTCGGTTTCGATGTGCGCAAGAACTCGGTCGACGCCATGCCCGACCTTCCG
TTCAAGATCATGATGAACGTCGGCAATCCCGATCGCGCTTTCGATTTCGCCCAGTTGCCGAACGAAGGCGTG
GGCCTGGCCCGCCTCGAATTCATCATCAACCGCATGATCGGCGTGCACCCCAAGGCGTTGCTGAACTTCGCC
GGCCTGCCGGCGGACATCAAGGAAAGCGTGGAGAAGCGCATCGCCGGCTATCCCGATCCGGTCGGCTTCTAC
GTCGAGAAGCTGGTGGAGGGCATCAGCACCCTGGCCGCGGCGTTCTGGCCGAAGAAGGTCATCGTGCGCCTG
TCCGACTTCAAGTCCAATGAGTACGCCAACCTGATCGGCGGCAAGCTCTACGAGCCGGAAGAAGAGAACCCG
ATGCTCGGCTTCCGTGGCGCCTCGCGCTACATCAGCGAGTCGTTCCGCGACTGCTTCGAGCTGGAGTGTCGT
GCGCTGAAGAAGGTCCGCAACGAAATGGGCCTGACCAACGTCGAGATCATGGTGCCCTTCGTGCGCACCCTG
GGCGAGGCGAGCCAGGTGGTCGAGCTGCTGGCCGGGAACGGCCTGAAGCGCGGCGAGAACGGACTGAAGGTC
ATCATGATGTGCGAACTGCCGTCGAACGCCCTGCTGGCCGACGAGTTCCTCGAGTTCTTCGATGGCTTCTCC
ATCGGTTCCAACGACCTGACCCAGCTGACCCTGGGCCTGGATCGCGATTCCGGCATCGTTGCCCACCTGTTC
GACGAGCGCAATCCGGCGGTGAAGAAGCTGCTGGCCAACGCCATCGCTGCCTGCAACAAGGCCGGCAAGTAC
ATCGGCATCTGCGGCCAGGGTCCGTCGGACCACCCGGACCTGGCCCGCTGGCTGATGGAGCAGGGCATCGAG
AGCGTCTCGTTGAACCCCGACTCGGTGCTGGATACCTGGTTCTTCCTCGCCGAGGGGCAAGACCAGGCCTGA
Translation:
MVEYVVSLDKLGVHDVEHVGGKNASLGEMISNLAGAGVSVPGGFATTAQAYRDFLEQSGLNDRIHAALDALD
VDDVNALAKTGAQIRQWVMEAEFPARLDSEIRQAFAALANGNDNLAVAVRSSATAEDLPDASFAGQQETFLN
IRGVDNVIRAAKEVFASLFNDRAIAYRVHQGFDHKLVALSAGVQRMVRSETGTAGVMFTLDTESGFRDVVFI
TGAYGLGETVVQGAVNPDEFYVHKPTLEAGRPAILRRNLGSKAIKMIYGDEAKAGRSVKVVDVDRADRARFA
LSDAEVTELAKQAMIIEKHYGRPMDIEWAKDGDDGKLYIVQARPETVKSRASATVMERYLLKEKGTVLVEGR
AIGQRIGAGPVKVINDVSEMDKVQPGDVLVSDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVV
GCGNATQILQDGQGVTVSCAEGDTGFIFEGELGFDVRKNSVDAMPDLPFKIMMNVGNPDRAFDFAQLPNEGV
GLARLEFIINRMIGVHPKALLNFAGLPADIKESVEKRIAGYPDPVGFYVEKLVEGISTLAAAFWPKKVIVRL
SDFKSNEYANLIGGKLYEPEEENPMLGFRGASRYISESFRDCFELECRALKKVRNEMGLTNVEIMVPFVRTL
GEASQVVELLAGNGLKRGENGLKVIMMCELPSNALLADEFLEFFDGFSIGSNDLTQLTLGLDRDSGIVAHLF
DERNPAVKKLLANAIAACNKAGKYIGICGQGPSDHPDLARWLMEQGIESVSLNPDSVLDTWFFLAEGQDQA*
AnnotationID:203GeneID:193
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 12:12:25
Gene Name:ppsA
Confidence Code:2
GeneProduct:phosphoenolpyruvate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:pyruvate phosphate dikinase
Functional Category Confidence Code:5
COGs:COG0574,pfam01326
Secondary Functional Category(ies):carbon compound metabolism
EC Number:2.7.9.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67696.1|AE016400_4 (AE016781) phosphoenolpyruvate synthase [Pseudomonas putida KT2440]
          Length = 791

 Score = 1479 bits (3830), Expect = 0.0
 Identities = 742/791 (93%), Positives = 774/791 (97%)

>gb|AAO55806.1| (AE016864) phosphoenolpyruvate synthase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 791

 Score = 1434 bits (3713), Expect = 0.0
 Identities = 718/788 (91%), Positives = 757/788 (96%)

>gb|AAO06985.1|AE016808_5 (AE016808) Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
           [Vibrio vulnificus CMCP6]
          Length = 796

 Score = 1147 bits (2967), Expect = 0.0
 Identities = 560/778 (71%), Positives = 659/778 (84%)

Structural Features:
COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 
[Carbohydrate transport and metabolism]
CD-Length = 740 residues,  99.5% aligned
Score =  758 bits (1958), Expect = 0.0
Identities = 406/787 (51%), Positives = 517/787 (65%), Gaps = 52/787 (6%)

pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain.
CD-Length = 362 residues, 100.0% aligned
Score =  320 bits (821), Expect = 5e-88
Identities = 141/376 (37%), Positives = 195/376 (51%), Gaps = 29/376 (7%)
Genomic Context:
Comment:
ReferenceID:14083
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17531
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37137
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:193_cdd.html
URL:
ReferenceID:37826
Author/Investigator(s): Niersbach M, Kreuzaler F, Geerse RH, Postma PW, Hirsch HJ.
Title: Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase.
PubMed: 1310524
MedLine:
Source:
Mol Gen Genet. 1992 Jan;231(2):332-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1310524
Homologs By Global Alignment
Gene ID:193

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
333 PA1770_tr translation of PA1770 791 99.99 99.99 0 4036.0
21226 gb|AAG05159.1|AE004602_10 (AE004602) phosphoenolpyruvate synthase [Pseudomonas aeruginosa PAO1] 791 99.87 99.99 0 4034.0
21227 gb|AAN67696.1|AE016400_4 (AE016781) phosphoenolpyruvate synthase [Pseudomonas putida KT2440] 791 93.67 97.85 0 3827.0
21228 gb|AAO55806.1| (AE016864) phosphoenolpyruvate synthase [Pseudomonas syringae pv. tomato str. DC3000] 791 90.64 95.70 0 3707.0
21231 gb|AAQ61371.1| (AE016923) phosphoenolpyruvate synthase [Chromobacterium violaceum ATCC 12472] 797 71.14 84.81 8 2966.0
GC ORFID: 43195How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1770Glimmer Score:
Start: 1233273Stop: 1235648
Length: 2376
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1770 translation of PA1770Homolog Bit Score 1559.0
Other Homologs: t_PA1770 (ORF: GLIMMER)
GC ORF Sequence
TTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTAGAGCATGTGGGGGGCAAGAACGCA
TCCCTCGGCGAGATGATCAGCAACCTGGCCGGTGCCGGCGTTTCCGTACCCGGCGGATTTGCCACCACCGCC
CAGGCCTACCGTGACTTCCTCGAGCAGAGTGGCCTCAACGACCGTATCCACGCGGCCCTGGACGCCCTGGAC
GTCGACGACGTCAACGCCCTGGCCAAGACCGGCGCGCAGATCCGCCAGTGGGTGATGGAAGCCGAGTTCCCG
GCCCGTCTCGACAGCGAGATCCGCCAGGCCTTCGCCGCCCTGGCCAACGGCAACGACAACCTCGCCGTGGCA
GTGCGTTCCTCCGCTACCGCCGAAGACCTTCCGGACGCCTCGTTCGCCGGCCAGCAGGAAACCTTCCTCAAT
ATCCGCGGCGTGGACAATGTGATCCGCGCAGCAAAAGAGGTCTTTGCCTCCCTGTTCAACGACCGCGCCATC
GCCTACCGCGTGCACCAGGGCTTCGATCACAAGCTGGTCGCCTTGTCCGCCGGCGTGCAGCGCATGGTCCGC
TCGGAAACCGGCACCGCCGGGGTGATGTTCACCCTGGACACCGAATCCGGCTTCCGCGACGTGGTCTTCATC
ACCGGTGCCTACGGCCTGGGCGAGACCGTGGTTCAGGGCGCGGTGAACCCCGACGAGTTCTACGTCCACAAG
CCGACCTTGGAAGCCGGGCGTCCGGCCATCCTGCGCCGCAACCTGGGTAGCAAGGCGATCAAGATGATCTAC
GGCGACGAAGCCAAGGCCGGTCGCTCGGTCAAGGTAGTGGACGTCGATCGCGCCGATCGCGCCCGCTTCGCC
CTGAGCGACGCCGAGGTCACCGAGCTGGCCAAGCAGGCCATGATCATCGAGAAGCACTATGGCCGCCCGATG
GACATCGAATGGGCCAAGGACGGTGACGACGGCAAGCTGTACATCGTCCAGGCACGCCCGGAAACCGTGAAG
AGCCGCGCCAGCGCCACGGTCATGGAGCGCTACCTGCTGAAAGAGAAGGGGACCGTCCTGGTGGAAGGACGT
GCCATCGGCCAGCGCATCGGTGCCGGTCCGGTCAAGGTGATCAACGACGTGTCGGAAATGGACAAGGTCCAA
CCGGGTGACGTCCTGGTCTCCGACATGACCGACCCGGACTGGGAGCCGGTGATGAAGCGCGCCAGCGCCATC
GTCACCAACCGCGGCGGGCGTACCTGCCACGCGGCGATCATCGCTCGCGAACTGGGCATCCCGGCGGTGGTC
GGTTGCGGCAACGCCACCCAGATCCTGCAGGATGGGCAGGGGGTGACCGTTTCCTGTGCCGAAGGCGATACC
GGCTTCATCTTCGAAGGCGAACTCGGTTTCGATGTGCGCAAGAACTCGGTCGACGCCATGCCCGACCTTCCG
TTCAAGATCATGATGAACGTCGGCAATCCCGATCGCGCTTTCGATTTCGCCCAGTTGCCGAACGAAGGCGTG
GGCCTGGCCCGCCTCGAATTCATCATCAACCGCATGATCGGCGTGCACCCCAAGGCGTTGCTGAACTTCGCC
GGCCTGCCGGCGGACATCAAGGAAAGCGTGGAGAAGCGCATCGCCGGCTATCCCGATCCGGTCGGCTTCTAC
GTCGAGAAGCTGGTGGAGGGCATCAGCACCCTGGCCGCGGCGTTCTGGCCGAAGAAGGTCATCGTGCGCCTG
TCCGACTTCAAGTCCAATGAGTACGCCAACCTGATCGGCGGCAAGCTCTACGAGCCGGAAGAAGAGAACCCG
ATGCTCGGCTTCCGTGGCGCCTCGCGCTACATCAGCGAGTCGTTCCGCGACTGCTTCGAGCTGGAGTGTCGT
GCGCTGAAGAAGGTCCGCAACGAAATGGGCCTGACCAACGTCGAGATCATGGTGCCCTTCGTGCGCACCCTG
GGCGAGGCGAGCCAGGTGGTCGAGCTGCTGGCCGGGAACGGCCTGAAGCGCGGCGAGAACGGACTGAAGGTC
ATCATGATGTGCGAACTGCCGTCGAACGCCCTGCTGGCCGACGAGTTCCTCGAGTTCTTCGATGGCTTCTCC
ATCGGTTCCAACGACCTGACCCAGCTGACCCTGGGCCTGGATCGCGATTCCGGCATCGTTGCCCACCTGTTC
GACGAGCGCAATCCGGCGGTGAAGAAGCTGCTGGCCAACGCCATCGCTGCCTGCAACAAGGCCGGCAAGTAC
ATCGGCATCTGCGGCCAGGGTCCGTCGGACCACCCGGACCTGGCCCGCTGGCTGATGGAGCAGGGCATCGAG
AGCGTCTCGTTGAACCCCGACTCGGTGCTGGATACCTGGTTCTTCCTCGCCGAGGGGCAAGACCAGGCCTGA