ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1929

TrivialName: PA14_04570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_04570

PAO1 Ortholog Locus: PA0349

Sequence Length: 1041

Protein Length: 346

Start: 406358

Stop: 407398

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03738.1|AE004472_10 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 342/346 (98%), Positives = 344/346 (99%)

Sequence:

GTGAGCCGGCGTCCGTGGGGCGTGCTGCTTGGCTGGTGCCTGTTGGCGGCCAGCGCGGTCCAGGCCGAAAGC
GCCATCGACCGGCAGCAGCGCGAACTGGCCCTGCTGCGCGAGGGCTGGTACCGGCAGGTCCCGCCGGCGCCG
GTGCCGCTGCCCATGCGTACGGCCGGGCCGGCGGATTCCGGCCAGGATGGCGTCGGCATACTGCTGCGCAAC
GTGGACATGTACCTGCGCGGCAACATCGGTTTCCACGTGCCCGAGGTGAAGGGCTGGCTGGTGCCGAACCGG
GCCGGCCAGCCGGTGGACTTCGATCGCCCGCAGGACATTCATTTCCAGGTGATGGAGGGCGAGGTGCTGCTC
AGCCCGCGGCAACTGGCCAACCTGTTCAACGAGCACATCCTCGCCTACGACGGGACCATGTTGAAGGACTTT
CGCATGAGCAGTGCGGCGGGACGCCTGGAGGTGGAGGGACGGGTGCGTCCGCTCGGCGTAGGGCCCTGGCTG
CCGCTGCGGCTGGGCGGCGGCGTGGAGGTGGACGCGGCCAGCGGCGCGCTGGTCTATCGGCCCGACCAGTTG
AAGGTGATCGGTCTGCCGCTGTACGGGGCGATGAGCCTGGTCGGCTTGCCGATGTCGGCGCTGGTCAGCCTC
GATCGGCCGGGGGCGAGCCTGGTCGGCAGCGCCATGCGCCTGGACTACCGCAAGGTCTTCCCGCTGCTGGGC
ATCGATGGCCACGTACAGGAGGCCTGGCTCGACGACCAGGGGCTGCACCTGCGTTTCTCCCAGGCGCCCGGC
CAGCCGTCGCCGGTGTTCAGCCCGCCGGCCGCGGCGGGCCCATCCTTCCTCTGGCTACAGTCCGGCGACCTG
AAGATCTTCGAAATCCTCATCACCTACGCCCAGGTGCTGCTGAAGACCGAGACCCCGGACCAGGTGCTGACC
TTCAACCTGCAGGACTACCGCAAGGTGCTGGCGACCGGCACCACCCAGGTCAACGAGGATGGCACCTTCTTC
ATGCAGGTGCCGCCGTATGCCAATCCCTTGTAG

Translation:

MSRRPWGVLLGWCLLAASAVQAESAIDRQQRELALLREGWYRQVPPAPVPLPMRTAGPADSGQDGVGILLRN
VDMYLRGNIGFHVPEVKGWLVPNRAGQPVDFDRPQDIHFQVMEGEVLLSPRQLANLFNEHILAYDGTMLKDF
RMSSAAGRLEVEGRVRPLGVGPWLPLRLGGGVEVDAASGALVYRPDQLKVIGLPLYGAMSLVGLPMSALVSL
DRPGASLVGSAMRLDYRKVFPLLGIDGHVQEAWLDDQGLHLRFSQAPGQPSPVFSPPAAAGPSFLWLQSGDL
KIFEILITYAQVLLKTETPDQVLTFNLQDYRKVLATGTTQVNEDGTFFMQVPPYANPL*

AnnotationID:1938 GeneID:1929

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 18:06:14

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0349

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14455

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21008

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1929

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3385 PA0349_tr translation of PA0349 346 98.84 99.42 0 1785.0

104613 gb|AAG03738.1|AE004472_10 (AE004472) hypothetical protein PA0349 [Pseudomonas aeruginosa PAO1] 346 98.55 99.42 0 1782.0

GC ORFID: `44931`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0349`	Glimmer Score:
Start: `6207700`	Stop: `6208740`
Length: `1041`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0349 translation of PA0349`	Homolog Bit Score `692.0`
Other Homologs: `t_PA0349 (ORF: GLIMMER)`
GC ORF Sequence
GTGAGCCGGCGTCCGTGGGGCGTGCTGCTTGGCTGGTGCCTGTTGGCGGCCAGCGCGGTCCAGGCCGAAAGC GCCATCGACCGGCAGCAGCGCGAACTGGCCCTGCTGCGCGAGGGCTGGTACCGGCAGGTCCCGCCGGCGCCG GTGCCGCTGCCCATGCGTACGGCCGGGCCGGCGGATTCCGGCCAGGATGGCGTCGGCATACTGCTGCGCAAC GTGGACATGTACCTGCGCGGCAACATCGGTTTCCACGTGCCCGAGGTGAAGGGCTGGCTGGTGCCGAACCGG GCCGGCCAGCCGGTGGACTTCGATCGCCCGCAGGACATTCATTTCCAGGTGATGGAGGGCGAGGTGCTGCTC AGCCCGCGGCAACTGGCCAACCTGTTCAACGAGCACATCCTCGCCTACGACGGGACCATGTTGAAGGACTTT CGCATGAGCAGTGCGGCGGGACGCCTGGAGGTGGAGGGACGGGTGCGTCCGCTCGGCGTAGGGCCCTGGCTG CCGCTGCGGCTGGGCGGCGGCGTGGAGGTGGACGCGGCCAGCGGCGCGCTGGTCTATCGGCCCGACCAGTTG AAGGTGATCGGTCTGCCGCTGTACGGGGCGATGAGCCTGGTCGGCTTGCCGATGTCGGCGCTGGTCAGCCTC GATCGGCCGGGGGCGAGCCTGGTCGGCAGCGCCATGCGCCTGGACTACCGCAAGGTCTTCCCGCTGCTGGGC ATCGATGGCCACGTACAGGAGGCCTGGCTCGACGACCAGGGGCTGCACCTGCGTTTCTCCCAGGCGCCCGGC CAGCCGTCGCCGGTGTTCAGCCCGCCGGCCGCGGCGGGCCCATCCTTCCTCTGGCTACAGTCCGGCGACCTG AAGATCTTCGAAATCCTCATCACCTACGCCCAGGTGCTGCTGAAGACCGAGACCCCGGACCAGGTGCTGACC TTCAACCTGCAGGACTACCGCAAGGTGCTGGCGACCGGCACCACCCAGGTCAACGAGGATGGCACCTTCTTC ATGCAGGTGCCGCCGTATGCCAATCCCTTGTAG