ViewGene

Locus Name:
GeneID:
Location:

GeneID:1928
TrivialName: PA14_71630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71630
PAO1 Ortholog Locus:PA5427
Sequence Length:1029
Protein Length:342
Start: 6380034
Stop: 6381062
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08812.1|AE004955_6 (AE004955) alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 341/342 (99%), Positives = 341/342 (99%)
Sequence:
ATGACCCTGCCACAGACCATGAAAGCCGCGGTCGTGCACGCCTACGGCGCGCCGCTGCGGATCGAGGAAGTC
AAGGTTCCGCTGCCCGGCCCCGGGCAGGTACTGGTGAAGATCGAAGCCTCCGGCGTCTGCCACACCGACCTG
CACGCCGCCGAGGGCGACTGGCCGGTGAAGCCGCCGTTGCCGTTCATTCCCGGTCACGAAGGCGTCGGCTAC
GTCGCCGCGGTGGGCAGCGGAGTGACCCGGGTGAAGGAAGGCGACCGGGTCGGCATCCCCTGGCTGTACACC
GCCTGCGGCTGCTGCGAGCACTGCCTGACCGGCTGGGAGACCCTCTGCGAGAGCCAGCAGAACACCGGCTAC
TCGGTGAACGGCGGCTATGCCGAATACGTATTGGCCGACCCGAACTACGTCGGAATTCTGCCGAAAAACGTC
GAATTCGCTGAAATCGCGCCGATCCTCTGCGCCGGCGTCACCGTCTACAAGGGGCTCAAGCAGACCAACGCG
CGCCCCGGCCAGTGGGTGGCGATCTCCGGCATCGGCGGCCTCGGCCACGTCGCCGTGCAGTACGCCAGGGCC
ATGGGCCTGCACGTCGCCGCCATCGACATCGACGACGCCAAGCTGGAACTGGCGCGCAAGCTCGGTGCCAGC
CTGACGGTCAACGCCCGGCAGGAAGACCCGGTGGAGGCGCTCCAGCGCGACATCGGCGGCGCCCACGGGGTG
CTGGTCACAGCGGTATCCAACAGCGCCTTCGGCCAGGCCATCGGCATGGCCCGCCGCGGCGGCACCATTGCC
CTGGTCGGCCTGCCGCCGGGTGACTTCCCGACGCCGATCTTCGACGTGGTGCTCAAGGGCCTGCACATCGCC
GGCTCCATCGTCGGCACCCGCGCGGACCTGCAGGAAGCCCTCGACTTCGCCGGCGAAGGCCTGGTCAAGGCG
ACCATCCATCCGGGCAAGCTGGACGACATCAACCAGATCCTCGACCAGATGCGCGCCGGGCAGATCGAGGGG
CGCATCGTCCTTGAGATGTGA
Translation:
MTLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGY
VAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNV
EFAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS
LTVNARQEDPVEALQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIA
GSIVGTRADLQEALDFAGEGLVKATIHPGKLDDINQILDQMRAGQIEGRIVLEM*
AnnotationID:1937GeneID:1928
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:38
Gene Name:adhA
Confidence Code:2
GeneProduct:alcohol dehydrogenase, zinc-containing
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1064,pfam00107,COG1062,COG1063,COG0604
Secondary Functional Category(ies):energy metabolism
EC Number:1.1.1.1
Status:ACTIVE
Pathway:
Homology:
>emb|CAD16839.1| (AL646073) PUTATIVE PROPANOL-PREFERRING ALCOHOL DEHYDROGENASE
           OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 341

 Score =  525 bits (1353), Expect = e-148
 Identities = 247/340 (72%), Positives = 287/340 (84%)

>gb|AAN29154.1|AE014333_6 (AE014333) alcohol dehydrogenase, zinc-containing [Brucella suis
           1330]
          Length = 344

 Score =  509 bits (1311), Expect = e-144
 Identities = 246/342 (71%), Positives = 288/342 (84%), Gaps = 2/342 (0%)

>gb|AAL52927.1| (AE009608) ALCOHOL DEHYDROGENASE [Brucella melitensis 16M]
          Length = 373

 Score =  502 bits (1292), Expect = e-141
 Identities = 245/343 (71%), Positives = 288/343 (83%), Gaps = 5/343 (1%)

Structural Features:
COG1064, AdhP, Zn-dependent alcohol dehydrogenases 
CD-Length = 339 residues,  99.4% aligned
Score =  426 bits (1096), Expect = 2e-120
Identities = 181/342 (52%), Positives = 237/342 (69%), Gaps = 8/342 (2%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  98.8% aligned
Score =  272 bits (696), Expect = 4e-74
Identities = 132/339 (38%), Positives = 191/339 (56%), Gaps = 14/339 (4%)

COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III 
[Energy production and conversion]
CD-Length = 366 residues,  97.5% aligned
Score =  206 bits (525), Expect = 4e-54
Identities = 123/361 (34%), Positives = 167/361 (46%), Gaps = 37/361 (10%)

COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases 
[Amino acid transport and metabolism]
CD-Length = 350 residues,  99.1% aligned
Score =  192 bits (488), Expect = 7e-50
Identities = 115/349 (32%), Positives = 166/349 (47%), Gaps = 17/349 (4%)

COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues, 100.0% aligned
Score =  180 bits (457), Expect = 3e-46
Identities = 114/351 (32%), Positives = 167/351 (47%), Gaps = 40/351 (11%)
Genomic Context:
Comment:
ReferenceID:3859
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21006
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34682
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1928_cdd.html
URL:
ReferenceID:35635
Author/Investigator(s): Holt PJ, Williams RE, Jordan KN, Lowe CR, Bruce NC.
Title: Cloning, sequencing and expression in Escherichia coli of the primary alcohol dehydrogenase gene from Thermoanaerobacter ethanolicus JW200.
PubMed: 10981690
MedLine:
Source:
FEMS Microbiol Lett. 2000 Sep 1;190(1):57-62.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10981690
ReferenceID:35636
Author/Investigator(s): Keshav KF, Yomano LP, An HJ, Ingram LO.
Title: Cloning of the Zymomonas mobilis structural gene encoding alcohol dehydrogenase I (adhA): sequence comparison and expression in Escherichia coli.
PubMed: 2185223
MedLine:
Source:
J Bacteriol. 1990 May;172(5):2491-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2185223
Homologs By Global Alignment
Gene ID:1928

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3384 PA5427_tr translation of PA5427 342 99.70 99.70 0 1786.0
104556 gb|AAG08812.1|AE004955_6 (AE004955) alcohol dehydrogenase [Pseudomonas aeruginosa PAO1] 342 99.70 99.70 0 1786.0
104557 emb|CAD16839.1| (AL646073) PUTATIVE PROPANOL-PREFERRING ALCOHOL DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 343 72.01 83.67 3 1353.0
104558 gb|AAN29154.1|AE014333_6 (AE014333) alcohol dehydrogenase, zinc-containing [Brucella suis 1330] 346 71.09 83.23 6 1315.0
104560 emb|CAD29583.1| (AJ441109) alcohol dehydrogenase [Moraxella sp. TAE123] 344 67.44 79.65 8 1257.0
GC ORFID: 44930How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5427Glimmer Score:
Start: 5643723Stop: 5644751
Length: 1029
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5427 translation of PA5427Homolog Bit Score 692.0
Other Homologs: t_PA5427 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCTGCCACAGACCATGAAAGCCGCGGTCGTGCACGCCTACGGCGCGCCGCTGCGGATCGAGGAAGTC
AAGGTTCCGCTGCCCGGCCCCGGGCAGGTACTGGTGAAGATCGAAGCCTCCGGCGTCTGCCACACCGACCTG
CACGCCGCCGAGGGCGACTGGCCGGTGAAGCCGCCGTTGCCGTTCATTCCCGGTCACGAAGGCGTCGGCTAC
GTCGCCGCGGTGGGCAGCGGAGTGACCCGGGTGAAGGAAGGCGACCGGGTCGGCATCCCCTGGCTGTACACC
GCCTGCGGCTGCTGCGAGCACTGCCTGACCGGCTGGGAGACCCTCTGCGAGAGCCAGCAGAACACCGGCTAC
TCGGTGAACGGCGGCTATGCCGAATACGTATTGGCCGACCCGAACTACGTCGGAATTCTGCCGAAAAACGTC
GAATTCGCTGAAATCGCGCCGATCCTCTGCGCCGGCGTCACCGTCTACAAGGGGCTCAAGCAGACCAACGCG
CGCCCCGGCCAGTGGGTGGCGATCTCCGGCATCGGCGGCCTCGGCCACGTCGCCGTGCAGTACGCCAGGGCC
ATGGGCCTGCACGTCGCCGCCATCGACATCGACGACGCCAAGCTGGAACTGGCGCGCAAGCTCGGTGCCAGC
CTGACGGTCAACGCCCGGCAGGAAGACCCGGTGGAGGCGCTCCAGCGCGACATCGGCGGCGCCCACGGGGTG
CTGGTCACAGCGGTATCCAACAGCGCCTTCGGCCAGGCCATCGGCATGGCCCGCCGCGGCGGCACCATTGCC
CTGGTCGGCCTGCCGCCGGGTGACTTCCCGACGCCGATCTTCGACGTGGTGCTCAAGGGCCTGCACATCGCC
GGCTCCATCGTCGGCACCCGCGCGGACCTGCAGGAAGCCCTCGACTTCGCCGGCGAAGGCCTGGTCAAGGCG
ACCATCCATCCGGGCAAGCTGGACGACATCAACCAGATCCTCGACCAGATGCGCGCCGGGCAGATCGAGGGG
CGCATCGTCCTTGAGATGTGA