ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1927

TrivialName: PA14_66530

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66530

PAO1 Ortholog Locus: PA5032

Sequence Length: 1074

Protein Length: 357

Start: 5934144

Stop: 5935217

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08417.1|AE004916_6 (AE004916) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 351/357 (98%), Positives = 353/357 (98%)

Sequence:

ATGAGCCGCCGCACGGACTCCGACGCACCGACCATCACCGCCGCCTATCCGCGCCTGCTGCTCGGCCTGCTG
GAGGAACGCGGCCTGGACGGACGCGCGCTGCTGCGGGAAATCGGTCTGTCGACGCTGCGACTGGAAGAGCCG
GAAGCACGCGTCACATCGCAGCAGTACCAGGCGATCGCCGCCGCGGCGCTCGCGCTGAGCGGCGACCCCGGC
CTCGGCGCACAGCTCGCCTTGCGCACGCCTCCCACCGCCCATGGCAGCCTgGGCTACGCGATGATGGCCTCG
GCGACGCTCGGCGATGCCTTGTGCCTGGCGCTGCGCTACATGCCGCTGCTGCAGGGCAACGTCGAAATCAGC
CTGCTGCGCGAGGACGAGCAGGTGATCCTGCGCCTGCTGCCAGGCCCCGCGCTCCCGCCGGCGCTGCACCGG
TACTTCAGCGAAGCCCTGCTGATCGGCCTGTATCGCTCCGGCGCCTGGCTGCTCGGCGAACCGGCCCTGGTC
GGCAGGCTCAACTTCGACTATCCCGAACCTGCCGTGCCTGTGCCACTGCCGCAGTGCCGCTACGACCAGGCC
CACGTCCAGCTGGTGTTCCCCGCCATCCTGCTCGTCCGCTCGCTACCGATGGCCGATCCGGCTGCATTGCGC
CGCGCCCGCGAACACTGCGAACGCGAACTGGCGCTGCTCGATGCCGGCCGCCGGGACATCTGCGCCCGCGTG
CGGCTGGAGCTGGAACGGCAGGAACAGCGTTTCCCCAACCTGGAGGAAGTAGCCACGCGCCTGCACCTGTCC
AGCCGCAGCCTCAAGCGGCATCTGCATGACGCCGGCACCAGCTTTCGCCAGTTGCTCGGCCAGGCTCGCCAG
CGCCAGGCCTTGCGATTGCTGCGGCGTCCCGAGGTGTCGTTGCAGCGTATCGCCCTGTACCTGGGCTACAGC
GATCCAACCAACTTCACCCGCGCCTTCAAGCGCTGGACCGGCGAGCCGCCGAGCGACACCCGCGCCCGCCTG
CTGGGCGGGCAACCAGTTTCACGAACAAATGCCAAGCGCTCGACAAATCCCTCGCGTTTCCCTTGA

Translation:

MSRRTDSDAPTITAAYPRLLLGLLEERGLDGRALLREIGLSTLRLEEPEARVTSQQYQAIAAAALALSGDPG
LGAQLALRTPPTAHGSLGYAMMASATLGDALCLALRYMPLLQGNVEISLLREDEQVILRLLPGPALPPALHR
YFSEALLIGLYRSGAWLLGEPALVGRLNFDYPEPAVPVPLPQCRYDQAHVQLVFPAILLVRSLPMADPAALR
RAREHCERELALLDAGRRDICARVRLELERQEQRFPNLEEVATRLHLSSRSLKRHLHDAGTSFRQLLGQARQ
RQALRLLRRPEVSLQRIALYLGYSDPTNFTRAFKRWTGEPPSDTRARLLGGQPVSRTNAKRSTNPSRFP*

AnnotationID:1936 GeneID:1927

AnnotatorUID: diggins

Modification Date/Time: 2005-03-14 14:02:02

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA5032

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: smart00342

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

mart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 78.7 bits (194), Expect = 9e-16
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Genomic Context:

Comment:

ReferenceID:3857

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21004

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34985

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1927_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1927

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3383 PA5032_tr translation of PA5032 357 98.31 98.87 0 1786.0

104555 gb|AAG08417.1|AE004916_6 (AE004916) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 357 98.31 98.87 0 1786.0

GC ORFID: `44929`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5032`	Glimmer Score:
Start: `5197827`	Stop: `5198900`
Length: `1074`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5032 translation of PA5032`	Homolog Bit Score `692.0`
Other Homologs: `t_PA5032 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCGCCGCACGGACTCCGACGCACCGACCATCACCGCCGCCTATCCGCGCCTGCTGCTCGGCCTGCTG GAGGAACGCGGCCTGGACGGACGCGCGCTGCTGCGGGAAATCGGTCTGTCGACGCTGCGACTGGAAGAGCCG GAAGCACGCGTCACATCGCAGCAGTACCAGGCGATCGCCGCCGCGGCGCTCGCGCTGAGCGGCGACCCCGGC CTCGGCGCACAGCTCGCCTTGCGCACGCCTCCCACCGCCCATGGCAGCCTgGGCTACGCGATGATGGCCTCG GCGACGCTCGGCGATGCCTTGTGCCTGGCGCTGCGCTACATGCCGCTGCTGCAGGGCAACGTCGAAATCAGC CTGCTGCGCGAGGACGAGCAGGTGATCCTGCGCCTGCTGCCAGGCCCCGCGCTCCCGCCGGCGCTGCACCGG TACTTCAGCGAAGCCCTGCTGATCGGCCTGTATCGCTCCGGCGCCTGGCTGCTCGGCGAACCGGCCCTGGTC GGCAGGCTCAACTTCGACTATCCCGAACCTGCCGTGCCTGTGCCACTGCCGCAGTGCCGCTACGACCAGGCC CACGTCCAGCTGGTGTTCCCCGCCATCCTGCTCGTCCGCTCGCTACCGATGGCCGATCCGGCTGCATTGCGC CGCGCCCGCGAACACTGCGAACGCGAACTGGCGCTGCTCGATGCCGGCCGCCGGGACATCTGCGCCCGCGTG CGGCTGGAGCTGGAACGGCAGGAACAGCGTTTCCCCAACCTGGAGGAAGTAGCCACGCGCCTGCACCTGTCC AGCCGCAGCCTCAAGCGGCATCTGCATGACGCCGGCACCAGCTTTCGCCAGTTGCTCGGCCAGGCTCGCCAG CGCCAGGCCTTGCGATTGCTGCGGCGTCCCGAGGTGTCGTTGCAGCGTATCGCCCTGTACCTGGGCTACAGC GATCCAACCAACTTCACCCGCGCCTTCAAGCGCTGGACCGGCGAGCCGCCGAGCGACACCCGCGCCCGCCTG CTGGGCGGGCAACCAGTTTCACGAACAAATGCCAAGCGCTCGACAAATCCCTCGCGTTTCCCTTGA