ViewGene
Locus Name:
GeneID:
Location:

GeneID:1926
TrivialName: PA14_56850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56850
PAO1 Ortholog Locus:PA4372
Sequence Length:1065
Protein Length:354
Start: 5064679
Stop: 5065743
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07760.1|AE004853_3 (AE004853) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/354 (99%), Positives = 352/354 (99%)
Sequence:
ATGTTCCGCCCACGACTGCTCTTGACCAGCCTCGCCATCGCCCTCGGCGCCTGTTCGCCGCAAGACCCGCAG
GCCGTCACCAGTGCCGCCCTGGCGCAACAGGTGATCCTGCCGACCTACAGCCGCTGGGTGGAGGCCGACCAG
GCCCTGGCCAGCAGCGCCCTGGCCTACTGCCAGGGCAAGGAAGACCTGGCCAAGGCCCGCGACGCGTTCCAC
GCCGCGCAGAAGGCCTGGGCCGAGCTGCAACCGCTGCTGATCGGCCCGCTGGCCGAGGGCAACCGCGCCTGG
CAGGTGCAGTTCTGGCCGGACAAGAAGGATCTGGTCGGGCGCCAGGTCGAACAGTTGCTGAAGAACAACCCG
CAGGTCGACGCCGCGGCCCTGGCCAAGGCCAGCGTGGTGGTGCAGGGGCTCTCCGCCTACGAATACATCCTC
TTCGACAGCAAGATCGACCTCGCTGACGCCGCCACCAAGGCCCGCTATTGCCCGTTGCTGGAAGCCATCGGC
ACCCACCAGCAGCAACTGGCCCAGGACATCCTGGCGCGCTGGAAGAACGACGGCGGCATGCTCACCCAGATG
AGCAAGTTCCCCAACGACCGCTACGCCGACGCCCACGAGGCGATCGCCGAGCTGCTGCGGGTCCAGGTCACC
GCCCTGGACATGCTGAAGAAGAAACTCGGTACTCCGCTGGGCCGGCAGAGCAAGGGCATTCCCCAGCCCTAC
CAGGCCGAGGCCTGGCGCAGCAACGCCTCGCTGGCCAGCCTGGACGCCAGCCTGAGCGGCGCCCAGGCGCTC
TGGGAAGGTATCGACGGCAAGGGCCTGAAGACCCTGCTGCCGGCCGAACAGAAGGCCCTGGCCGGCAAGATC
GACGCCGCCTACGTCGACAGCCACGCGAAGCTGGCGGCGCTGGAACAGAAACCGCTCTCCGAACTGCTCGCC
AGCGAAGACGGGCGCAACCAGCTCAACGCCCTCTATGACAGCCTGAACGTGGTCCACCGCCTGCACGAAGGC
GACCTGGCCCGCGCCCTCGGCGTGCAACTGGGCTTCAACGCCAACGATGGCGACTGA
Translation:
MFRPRLLLTSLAIALGACSPQDPQAVTSAALAQQVILPTYSRWVEADQALASSALAYCQGKEDLAKARDAFH
AAQKAWAELQPLLIGPLAEGNRAWQVQFWPDKKDLVGRQVEQLLKNNPQVDAAALAKASVVVQGLSAYEYIL
FDSKIDLADAATKARYCPLLEAIGTHQQQLAQDILARWKNDGGMLTQMSKFPNDRYADAHEAIAELLRVQVT
ALDMLKKKLGTPLGRQSKGIPQPYQAEAWRSNASLASLDASLSGAQALWEGIDGKGLKTLLPAEQKALAGKI
DAAYVDSHAKLAALEQKPLSELLASEDGRNQLNALYDSLNVVHRLHEGDLARALGVQLGFNANDGD*
AnnotationID:1935GeneID:1926
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 07:07:31
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4372
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3489
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57818.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 354

 Score =  523 bits (1348), Expect = e-148
 Identities = 265/355 (74%), Positives = 305/355 (85%), Gaps = 2/355 (0%)







 
Structural Features:
COG3489, Predicted periplasmic lipoprotein
CD-Length = 359 residues, 100.0% aligned
Score =  399 bits (1026), Expect = 5e-112
Identities = 163/363 (44%), Positives = 200/363 (55%), Gaps = 13/363 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3855




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17123




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1926_cdd.html


    		




 
URL:

















    ReferenceID:21002




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1926
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3382
                           PA4372_tr
                           translation of PA4372
                           354
                           99.43
                           99.43
                           0
                           1785.0
     

     
     
104552
                           gb|AAG07760.1|AE004853_3
                           (AE004853) hypothetical protein PA4372 [Pseudomonas aeruginosa PAO1]
                           354
                           99.43
                           99.43
                           0
                           1785.0
     

     
     
104553
                           gb|AAO57818.1|
                           (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           355
                           74.64
                           85.91
                           2
                           1352.0
     

     
     
104554
                           gb|AAN66534.1|AE016282_2
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           355
                           73.80
                           83.94
                           2
                           1327.0
     

     






      

          
GC ORFID: 44928How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4372Glimmer Score: 

          
Start: 4328355Stop: 4329419

          
Length: 1065


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4372 translation of PA4372Homolog Bit Score 692.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1980 (ORF: BLASTX 523.0), t_PA4372 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGCCCACGACTGCTCTTGACCAGCCTCGCCATCGCCCTCGGCGCCTGTTCGCCGCAAGACCCGCAG 
GCCGTCACCAGTGCCGCCCTGGCGCAACAGGTGATCCTGCCGACCTACAGCCGCTGGGTGGAGGCCGACCAG 
GCCCTGGCCAGCAGCGCCCTGGCCTACTGCCAGGGCAAGGAAGACCTGGCCAAGGCCCGCGACGCGTTCCAC 
GCCGCGCAGAAGGCCTGGGCCGAGCTGCAACCGCTGCTGATCGGCCCGCTGGCCGAGGGCAACCGCGCCTGG 
CAGGTGCAGTTCTGGCCGGACAAGAAGGATCTGGTCGGGCGCCAGGTCGAACAGTTGCTGAAGAACAACCCG 
CAGGTCGACGCCGCGGCCCTGGCCAAGGCCAGCGTGGTGGTGCAGGGGCTCTCCGCCTACGAATACATCCTC 
TTCGACAGCAAGATCGACCTCGCTGACGCCGCCACCAAGGCCCGCTATTGCCCGTTGCTGGAAGCCATCGGC 
ACCCACCAGCAGCAACTGGCCCAGGACATCCTGGCGCGCTGGAAGAACGACGGCGGCATGCTCACCCAGATG 
AGCAAGTTCCCCAACGACCGCTACGCCGACGCCCACGAGGCGATCGCCGAGCTGCTGCGGGTCCAGGTCACC 
GCCCTGGACATGCTGAAGAAGAAACTCGGTACTCCGCTGGGCCGGCAGAGCAAGGGCATTCCCCAGCCCTAC 
CAGGCCGAGGCCTGGCGCAGCAACGCCTCGCTGGCCAGCCTGGACGCCAGCCTGAGCGGCGCCCAGGCGCTC 
TGGGAAGGTATCGACGGCAAGGGCCTGAAGACCCTGCTGCCGGCCGAACAGAAGGCCCTGGCCGGCAAGATC 
GACGCCGCCTACGTCGACAGCCACGCGAAGCTGGCGGCGCTGGAACAGAAACCGCTCTCCGAACTGCTCGCC 
AGCGAAGACGGGCGCAACCAGCTCAACGCCCTCTATGACAGCCTGAACGTGGTCCACCGCCTGCACGAAGGC 
GACCTGGCCCGCGCCCTCGGCGTGCAACTGGGCTTCAACGCCAACGATGGCGACTGA