ViewGene
Locus Name:
GeneID:
Location:

GeneID:1925
TrivialName: PA14_10900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10900
PAO1 Ortholog Locus:PA4097
Sequence Length:1059
Protein Length:352
Start: 943773
Stop: 942715
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07484.1|AE004826_2 (AE004826) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
Identities = 350/352 (99%), Positives = 351/352 (99%)
Sequence:
ATGAAAGCACTGCGCTGGCACGCCGCCCGCGACCTCCGCCTGAGCGAACTGGAACGCCAGGCGCCGCGGCCC
GGCGAAGTCGAACTGGAAGTCGCCTACTGCGGCATCTGCGGCAGCGACCTGCACGAATACCAGAGCGGCCCG
CACTCGATTCCCCAGGCCGAGGCGCACCCGCTGTCCGGTTGCCGCGCGCCGCTGACCCTCGGCCATGAGTTC
TGCGGCGTGGTCGCCGCGCTCGGCCCTGGCGTGGAGGGACTGCGCATCGGCGACCGCGTCGCGGTGGAGCCG
GAATACCGCTGCGGCGAATGCCGCTACTGCCGGGAAGGCCGCTACAACCTCTGCGAGTCGATGGGCTTCATC
GGCCTGATGGGCGACGGCGGCTTCGCCGAGCGCGCGCGGGTGCCGGCCTACATGCTGCACCGCCTGCCGGAC
GCGGTGGGCTTCCGCCAGGCCGCCGTGCTCGAACCGGCCGCCGTGGCCCTGCACGCGCTGCGCCGCAGCAGC
CTGGCGCCGGGCCAGCGCTGCGCGGTGTTCGGGCTCGGCCCGATCGGTCTGCTGCTGGTGATGCTCGCCCGC
CTGCGCGGAATCGAGGACATCGCCGCGGTCGACGTCAGTCCCGAGCGCCTCGCCCTGGCCGGCGAATTCGGC
GCCAGCCGGGCGCTCGACGCCCGTGACGGCGACACGGCGGCGCGCCTGCGCGAAGGCGGCGCGCTCGATTGC
GCCTTCGAGGCCGCCGGCAGCCAGGCCAGCCTCGACGCCGCCCTGGCCAGCCTGCGCAAGGGTGGCGAGCTG
GTGCTGGTGAGCCTGATGGGCGAGGTCAGGCTGGACGCCTTCGACCTGGTCAACCGCGAACTGCGCCTGCTC
GGCAGCGTCGGCTACCGCGACGCCTACCCGGAGCTGATCGCCCTGCTCGCCGATGGCCGCCTCGACCTGGCC
CGCGCAGTGACCCGCAGCGTGCCCCTGGAGCAGGCCGTCGAGCACGGTTTCGAGGCCCTGCTGCGCGACAAG
TCGCAGGTCAAGGTGCTGGTCAATCCCAACCCGGCCCTGGCCGACGCCTGA
Translation:
MKALRWHAARDLRLSELERQAPRPGEVELEVAYCGICGSDLHEYQSGPHSIPQAEAHPLSGCRAPLTLGHEF
CGVVAALGPGVEGLRIGDRVAVEPEYRCGECRYCREGRYNLCESMGFIGLMGDGGFAERARVPAYMLHRLPD
AVGFRQAAVLEPAAVALHALRRSSLAPGQRCAVFGLGPIGLLLVMLARLRGIEDIAAVDVSPERLALAGEFG
ASRALDARDGDTAARLREGGALDCAFEAAGSQASLDAALASLRKGGELVLVSLMGEVRLDAFDLVNRELRLL
GSVGYRDAYPELIALLADGRLDLARAVTRSVPLEQAVEHGFEALLRDKSQVKVLVNPNPALADA*
AnnotationID:1934GeneID:1925
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 10:10:18
Gene Name:
Confidence Code:3
GeneProduct:putative Zn-dependent alcohol dehydrogenase
Cell Localization:()
Synonyms:ydjL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1063,pfam00107,COG1064
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC15309.1| (AP004604) alcohol dehydrogenase [Oceanobacillus iheyensis HTE831]
          Length = 351

 Score =  322 bits (825), Expect = 2e-87
 Identities = 154/348 (44%), Positives = 231/348 (66%), Gaps = 3/348 (0%)

>gb|AAP07682.1| (AE017000) (R,R)-butanediol dehydrogenase [Bacillus cereus ATCC
           14579]
          Length = 350

 Score =  298 bits (762), Expect = 4e-80
 Identities = 153/350 (43%), Positives = 225/350 (64%), Gaps = 6/350 (1%)

>gb|AAP24688.1| (AE017026) alcohol dehydrogenase, zinc-containing [Bacillus
           anthracis str. Ames]
          Length = 350

 Score =  295 bits (756), Expect = 2e-79
 Identities = 152/350 (43%), Positives = 224/350 (64%), Gaps = 6/350 (1%)






 
Structural Features:
COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases 
[Amino acid transport and metabolism]
CD-Length = 350 residues,  99.7% aligned
Score =  258 bits (661), Expect = 6e-70
Identities = 146/361 (40%), Positives = 195/361 (54%), Gaps = 28/361 (7%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues, 100.0% aligned
Score =  240 bits (613), Expect = 2e-64
Identities = 133/352 (37%), Positives = 177/352 (50%), Gaps = 22/352 (6%)

COG1064, AdhP, Zn-dependent alcohol dehydrogenases 
CD-Length = 339 residues,  98.8% aligned
Score =  227 bits (580), Expect = 2e-60
Identities = 115/353 (32%), Positives = 180/353 (50%), Gaps = 25/353 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3853




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21000




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36845




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1925_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1925
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3380
                           PA4097_tr
                           translation of PA4097
                           352
                           99.43
                           99.71
                           0
                           1787.0
     

     
     
104541
                           gb|AAG07484.1|AE004826_2
                           (AE004826) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
                           352
                           99.43
                           99.71
                           0
                           1787.0
     

     
     
104542
                           dbj|BAC15309.1|
                           (AP004604) alcohol dehydrogenase [Oceanobacillus iheyensis HTE831]
                           355
                           43.38
                           65.07
                           7
                           827.0
     

     
     
104547
                           dbj|BAA22767.1|
                           (AB007638) dehydrogenase [Bacillus subtilis]
                           356
                           42.97
                           60.95
                           14
                           751.0
     

     
     
104546
                           emb|CAB12443.1|
                           (Z99107) ydjL [Bacillus subtilis subsp. subtilis str. 168]
                           356
                           42.97
                           60.95
                           14
                           751.0
     

     






      

          
GC ORFID: 44927How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4097Glimmer Score: 

          
Start: 4010164Stop: 4011222

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4097 translation of PA4097Homolog Bit Score 692.0

          
Other Homologs:  t_PA4153 (ORF: BLASTX 275.0), t_PA4097 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCACTGCGCTGGCACGCCGCCCGCGACCTCCGCCTGAGCGAACTGGAACGCCAGGCGCCGCGGCCC 
GGCGAAGTCGAACTGGAAGTCGCCTACTGCGGCATCTGCGGCAGCGACCTGCACGAATACCAGAGCGGCCCG 
CACTCGATTCCCCAGGCCGAGGCGCACCCGCTGTCCGGTTGCCGCGCGCCGCTGACCCTCGGCCATGAGTTC 
TGCGGCGTGGTCGCCGCGCTCGGCCCTGGCGTGGAGGGACTGCGCATCGGCGACCGCGTCGCGGTGGAGCCG 
GAATACCGCTGCGGCGAATGCCGCTACTGCCGGGAAGGCCGCTACAACCTCTGCGAGTCGATGGGCTTCATC 
GGCCTGATGGGCGACGGCGGCTTCGCCGAGCGCGCGCGGGTGCCGGCCTACATGCTGCACCGCCTGCCGGAC 
GCGGTGGGCTTCCGCCAGGCCGCCGTGCTCGAACCGGCCGCCGTGGCCCTGCACGCGCTGCGCCGCAGCAGC 
CTGGCGCCGGGCCAGCGCTGCGCGGTGTTCGGGCTCGGCCCGATCGGTCTGCTGCTGGTGATGCTCGCCCGC 
CTGCGCGGAATCGAGGACATCGCCGCGGTCGACGTCAGTCCCGAGCGCCTCGCCCTGGCCGGCGAATTCGGC 
GCCAGCCGGGCGCTCGACGCCCGTGACGGCGACACGGCGGCGCGCCTGCGCGAAGGCGGCGCGCTCGATTGC 
GCCTTCGAGGCCGCCGGCAGCCAGGCCAGCCTCGACGCCGCCCTGGCCAGCCTGCGCAAGGGTGGCGAGCTG 
GTGCTGGTGAGCCTGATGGGCGAGGTCAGGCTGGACGCCTTCGACCTGGTCAACCGCGAACTGCGCCTGCTC 
GGCAGCGTCGGCTACCGCGACGCCTACCCGGAGCTGATCGCCCTGCTCGCCGATGGCCGCCTCGACCTGGCC 
CGCGCAGTGACCCGCAGCGTGCCCCTGGAGCAGGCCGTCGAGCACGGTTTCGAGGCCCTGCTGCGCGACAAG 
TCGCAGGTCAAGGTGCTGGTCAATCCCAACCCGGCCCTGGCCGACGCCTGA