ViewGene
Locus Name:
GeneID:
Location:

GeneID:1924
TrivialName: PA14_37470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37470
PAO1 Ortholog Locus:PA2090
Sequence Length:1080
Protein Length:359
Start: 3335710
Stop: 3334631
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05478.1|AE004636_9 (AE004636) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 356/359 (99%), Positives = 357/359 (99%)
Sequence:
ATGAGCATCGAACTGCGCGGCGGCGTGCGCGCCTCCGCGGTCATCGGCGACAGTGCCTTCGCCCGCCAGGCC
GCGCGTTTCCTGCCGGACACCCGCAGTCGCGCGGTGAGTGCCTTCGACATCCAGCAGAAGGCCCGCCTGGAA
GAGGCGGACGGCCTCGACGGCGCGCTGTTCACCGTTTCCGCTGCCTGGCCCGACCCCTGGCTGGTCGCCGGC
TGGGCTTTGGCCGCGGCGCCGCGCCTGCGCGCCACCGTCGCGCACCGACCGGGGAGCGCCCAGCCGACCGTT
GCCGCGCGCGCCCTGGCCACTCTCGACGGCCTGTCCAACGGGCGCGCCGGCGTACATCTGGTGATCGGCTCC
AGCGACGCCGACGTGCGCCGCGACGGCGACCTCGCCGACAAGGACGAACGCTACCGGCGCGCCGTGGAGTAC
CTGGAGGTCTTCACCCGCGCCCTGGAAAGCCGCGACCCCTTCGACTACCACGGCGAGTTCTACCGGCTGGAG
GACGCCGGCAGCGGCTTCCTGCCGATCCAGCGGCCGCGCCCGCCGCTATCCGTTGGCGGCTCCTCGGCGCAG
GCACAACGCCTGGCGGTGCGCTTCGCTGACGTCTACGCCGGCCACTTCGCCAGCCCCACGCAGACCGCGGAG
CTCAAGCGCAGGCTGAACGAGGAGGCGGCGGAGCAGGGCCGGCGGCTGAAGTTCTGGAAGCACTTCCAGGTG
ATCCTCGGCGACAGTCCGGCGGCGGCCCTGGACATCGCCGAGCACTACCGCCAGGCCGCTTTCGAACTGCTT
CTGGCACGGCCCCTCGACGAACTGGCGGCATCGCCGCAGGTCGCCCGCGACGGCGAGCGCGACCGGCTCGCC
CGGCTGGAGCCGGAGGCCTTGCGCGAATGGGTGGCGAATACCGTGCAGCGCAGCTTCGCCGGGGTGCTGGTG
GGCAGCGTCGGCGAGGTGGCGGAACAGATCCTGGCCTTTCATCGCGCCGGCATCGAGATCGTCCAGCTCGAG
GCCACCACCGAGAACGCCGAGGACATCCGCTTGCGCCGCCAACTGATCGAGCGTCTGAGGCGCGACGCATGA
Translation:
MSIELRGGVRASAVIGDSAFARQAARFLPDTRSRAVSAFDIQQKARLEEADGLDGALFTVSAAWPDPWLVAG
WALAAAPRLRATVAHRPGSAQPTVAARALATLDGLSNGRAGVHLVIGSSDADVRRDGDLADKDERYRRAVEY
LEVFTRALESRDPFDYHGEFYRLEDAGSGFLPIQRPRPPLSVGGSSAQAQRLAVRFADVYAGHFASPTQTAE
LKRRLNEEAAEQGRRLKFWKHFQVILGDSPAAALDIAEHYRQAAFELLLARPLDELAASPQVARDGERDRLA
RLEPEALREWVANTVQRSFAGVLVGSVGEVAEQILAFHRAGIEIVQLEATTENAEDIRLRRQLIERLRRDA*
AnnotationID:1933GeneID:1924
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative flavin-dependent oxidoreductase
Cell Localization:()
Synonyms:PA2090
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene 
tetrahydromethanopterin reductase and related 
flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  96.4% aligned
Score =  131 bits (330), Expect = 1e-31
Identities = 95/337 (28%), Positives = 124/337 (36%), Gaps = 22/337 (6%)
 







   
Genomic Context:






   
Comment:


















    ReferenceID:3851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20998




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32617




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1924_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1924
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3379
                           PA2090_tr
                           translation of PA2090
                           359
                           99.16
                           99.44
                           0
                           1787.0
     

     
     
104540
                           gb|AAG05478.1|AE004636_9
                           (AE004636) hypothetical protein PA2090 [Pseudomonas aeruginosa PAO1]
                           359
                           99.16
                           99.44
                           0
                           1787.0
     

     






      

          
GC ORFID: 44926How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2090Glimmer Score: 

          
Start: 1618204Stop: 1619283

          
Length: 1080


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2090 translation of PA2090Homolog Bit Score 692.0

          
Other Homologs:  t_PA2090 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCGAACTGCGCGGCGGCGTGCGCGCCTCCGCGGTCATCGGCGACAGTGCCTTCGCCCGCCAGGCC 
GCGCGTTTCCTGCCGGACACCCGCAGTCGCGCGGTGAGTGCCTTCGACATCCAGCAGAAGGCCCGCCTGGAA 
GAGGCGGACGGCCTCGACGGCGCGCTGTTCACCGTTTCCGCTGCCTGGCCCGACCCCTGGCTGGTCGCCGGC 
TGGGCTTTGGCCGCGGCGCCGCGCCTGCGCGCCACCGTCGCGCACCGACCGGGGAGCGCCCAGCCGACCGTT 
GCCGCGCGCGCCCTGGCCACTCTCGACGGCCTGTCCAACGGGCGCGCCGGCGTACATCTGGTGATCGGCTCC 
AGCGACGCCGACGTGCGCCGCGACGGCGACCTCGCCGACAAGGACGAACGCTACCGGCGCGCCGTGGAGTAC 
CTGGAGGTCTTCACCCGCGCCCTGGAAAGCCGCGACCCCTTCGACTACCACGGCGAGTTCTACCGGCTGGAG 
GACGCCGGCAGCGGCTTCCTGCCGATCCAGCGGCCGCGCCCGCCGCTATCCGTTGGCGGCTCCTCGGCGCAG 
GCACAACGCCTGGCGGTGCGCTTCGCTGACGTCTACGCCGGCCACTTCGCCAGCCCCACGCAGACCGCGGAG 
CTCAAGCGCAGGCTGAACGAGGAGGCGGCGGAGCAGGGCCGGCGGCTGAAGTTCTGGAAGCACTTCCAGGTG 
ATCCTCGGCGACAGTCCGGCGGCGGCCCTGGACATCGCCGAGCACTACCGCCAGGCCGCTTTCGAACTGCTT 
CTGGCACGGCCCCTCGACGAACTGGCGGCATCGCCGCAGGTCGCCCGCGACGGCGAGCGCGACCGGCTCGCC 
CGGCTGGAGCCGGAGGCCTTGCGCGAATGGGTGGCGAATACCGTGCAGCGCAGCTTCGCCGGGGTGCTGGTG 
GGCAGCGTCGGCGAGGTGGCGGAACAGATCCTGGCCTTTCATCGCGCCGGCATCGAGATCGTCCAGCTCGAG 
GCCACCACCGAGAACGCCGAGGACATCCGCTTGCGCCGCCAACTGATCGAGCGTCTGAGGCGCGACGCATGA