ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1923

TrivialName: PA14_05400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05400

PAO1 Ortholog Locus: PA0414

Sequence Length: 1032

Protein Length: 343

Start: 476287

Stop: 477318

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03803.1|AE004478_8 (AE004478) probable methylesterase [Pseudomonas aeruginosa PAO1] Identities = 340/343 (99%), Positives = 340/343 (99%)

Sequence:

ATGAGTGAGCGCGCCACGCCACGGGTCGCGGTGATCGCCGACACCTCGTTGCAGCGCCACGTGTTGCAACAG
GCGCTGCTCGGCCATGGCTACGAGGTGGTGCTCAACGCCGACCCGGCCAGGGTCGACGACGCCGCGCTGGAG
TGCGCGCCCGACCTGTGGCTGGTGGACCTGACCCAGCAGGACGACTCGCCGCTGCTGGACAGCCTGCTGGAG
CAGGACTGTGCGCCGGTGCTGTTCGGCGAGGGCCACGCGCCGGAGCGGCATACCGAACATTACCCGCGCTGG
GAGCGGCGGCTGATCGGCAAGCTGAAGCGCTTGATCGGCGACCCCAGCGATGGCGTTGGCGACAGCCTCGGC
GCATTGCTCGACGAGGAGCGTCCGCCGCGCCTGGAGATTCCCGGCGACCTCGCGGCGATGCCGCTGCAGGCC
GGCGAAGCGGCCCGCGAGGTGTGGCTGCTGGCGGCCTCGCTCGGCGGCCCGGCGGCGGTGAAGGCATTTCTC
GACGCCTTGCCCGGCGGCCTGCCGATCGGCTTCCTCTATGCCCAGCACATCGACGCCAGCTTCGAGCAGAAC
CTGCCGCAGGCAGTCGGCCGGCACAGCCAGTGGCATGTGAAGAACGTCCGCGACGGTGAAGCGCTGCGTTGC
GGCGAGGTCATGGTGGTGCCGGTGCTGCACGAACTCGGTTTCCACCACGATGGGCGACTGAAATGCAGCCAG
CGTCCCTGGCCGGAACCCTACACCCCGTCCATCGACCAGATGATGCTCAACCTGGCCCAGCAGTTCGGGCCC
GACTGCGGGGTGATCGTCTTCAGCGGCATGGGTAGCGACGGCAGCGCCGCTGCCGCCTACGTGCGGCGCCAG
GGTGGCGAGGTATGGACCCAGCGCGCCGACAGTTGCGTCTGTTCGAGCATGCCGGACAGCTTGCGCGAAGCC
GGTTACAGCAGTTTCAATGCCAGCCCCCGCGAACTGGCCGAGGCATTGGTCAAGCATCTGGCCGCACGCTGC
GCGCCGACAGGAGTCGAAACATGA

Translation:

MSERATPRVAVIADTSLQRHVLQQALLGHGYEVVLNADPARVDDAALECAPDLWLVDLTQQDDSPLLDSLLE
QDCAPVLFGEGHAPERHTEHYPRWERRLIGKLKRLIGDPSDGVGDSLGALLDEERPPRLEIPGDLAAMPLQA
GEAAREVWLLAASLGGPAAVKAFLDALPGGLPIGFLYAQHIDASFEQNLPQAVGRHSQWHVKNVRDGEALRC
GEVMVVPVLHELGFHHDGRLKCSQRPWPEPYTPSIDQMMLNLAQQFGPDCGVIVFSGMGSDGSAAAAYVRRQ
GGEVWTQRADSCVCSSMPDSLREAGYSSFNASPRELAEALVKHLAARCAPTGVET*

AnnotationID:1932 GeneID:1923

AnnotatorUID: urbach

Modification Date/Time: 2004-03-02 11:11:02

Gene Name:

Confidence Code: 3

GeneProduct: probable methylesterase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:3849

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20996

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1923

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3378 PA0414_tr translation of PA0414 343 99.12 99.12 0 1789.0

104538 gb|AAG03803.1|AE004478_8 (AE004478) probable methylesterase [Pseudomonas aeruginosa PAO1] 343 99.12 99.12 0 1789.0

104539 gb|AAC23932.1| (U79580) ChpB [Pseudomonas aeruginosa] 343 99.12 99.12 0 1789.0

GC ORFID: `44925`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0414`	Glimmer Score:
Start: `6277629`	Stop: `6278660`
Length: `1032`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0414 translation of PA0414`	Homolog Bit Score `693.0`
Other Homologs: `t_PA0414 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTGAGCGCGCCACGCCACGGGTCGCGGTGATCGCCGACACCTCGTTGCAGCGCCACGTGTTGCAACAG GCGCTGCTCGGCCATGGCTACGAGGTGGTGCTCAACGCCGACCCGGCCAGGGTCGACGACGCCGCGCTGGAG TGCGCGCCCGACCTGTGGCTGGTGGACCTGACCCAGCAGGACGACTCGCCGCTGCTGGACAGCCTGCTGGAG CAGGACTGTGCGCCGGTGCTGTTCGGCGAGGGCCACGCGCCGGAGCGGCATACCGAACATTACCCGCGCTGG GAGCGGCGGCTGATCGGCAAGCTGAAGCGCTTGATCGGCGACCCCAGCGATGGCGTTGGCGACAGCCTCGGC GCATTGCTCGACGAGGAGCGTCCGCCGCGCCTGGAGATTCCCGGCGACCTCGCGGCGATGCCGCTGCAGGCC GGCGAAGCGGCCCGCGAGGTGTGGCTGCTGGCGGCCTCGCTCGGCGGCCCGGCGGCGGTGAAGGCATTTCTC GACGCCTTGCCCGGCGGCCTGCCGATCGGCTTCCTCTATGCCCAGCACATCGACGCCAGCTTCGAGCAGAAC CTGCCGCAGGCAGTCGGCCGGCACAGCCAGTGGCATGTGAAGAACGTCCGCGACGGTGAAGCGCTGCGTTGC GGCGAGGTCATGGTGGTGCCGGTGCTGCACGAACTCGGTTTCCACCACGATGGGCGACTGAAATGCAGCCAG CGTCCCTGGCCGGAACCCTACACCCCGTCCATCGACCAGATGATGCTCAACCTGGCCCAGCAGTTCGGGCCC GACTGCGGGGTGATCGTCTTCAGCGGCATGGGTAGCGACGGCAGCGCCGCTGCCGCCTACGTGCGGCGCCAG GGTGGCGAGGTATGGACCCAGCGCGCCGACAGTTGCGTCTGTTCGAGCATGCCGGACAGCTTGCGCGAAGCC GGTTACAGCAGTTTCAATGCCAGCCCCCGCGAACTGGCCGAGGCATTGGTCAAGCATCTGGCCGCACGCTGC GCGCCGACAGGAGTCGAAACATGA