ViewGene
Locus Name:
GeneID:
Location:

GeneID:1922
TrivialName: PA14_52310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52310
PAO1 Ortholog Locus:PA0923
Sequence Length:1050
Protein Length:349
Start: 4643607
Stop: 4642558
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04312.1|AE004526_7 (AE004526) DNA damage inducible protein P [Pseudomonas aeruginosa PAO1]
Identities = 349/349 (100%), Positives = 349/349 (100%)
Sequence:
GTGCGGAAAATCATCCATATAGACTGCGACTGTTTCTACGCCGCCCTCGAGATGCGCGACGACCCCAGCCTG
CGCGGCAAGGCGCTGGCGGTTGGCGGTTCGCCGGACAAGCGCGGAGTGGTCGCCACTTGCAGCTACGAGGCG
CGGGCCTATGGCGTGCGCTCGGCGATGGCCATGCGCACGGCGCTCAAGCTGTGTCCCGATCTCCTGGTGGTG
CGCCCGCGTTTCGATGTCTACCGGGCGGTGTCGAAGCAGATCCATGCGATCTTCCGCGACTATACCGATCTG
ATCGAGCCGCTTTCGCTGGACGAGGCCTACCTGGACGTCAGCGCTTCGCCGCATTTCGCCGGTAGCGCCACG
CGGATCGCCCAGGACATCCGCCGCCGGGTGGCCGAGGAACTGCACATCACCGTTTCGGCGGGCGTCGCGCCG
AACAAGTTCCTGGCCAAGATCGCCAGCGACTGGCGCAAGCCGGACGGGCTGTTTGTGATTACCCCGGAGCAG
GTCGACGGGTTCGTCGCCGAGTTGCCGGTGGCCAAGTTGCATGGCGTCGGCAAGGTCACGGCGGAGCGCCTG
GCGCGGATGGGCATCCGCACCTGCGCCGACCTGCGCCAGGGCAGCAAGCTGAGCCTGGTGCGCGAGTTCGGC
AGCTTCGGCGAACGCCTGTGGGGACTGGCCCATGGTATCGACGAGCGACCGGTGGAAGTCGACAGCCGGCGC
CAGTCGGTGAGCGTCGAATGTACCTTCGATCGCGACCTGCCGGACCTGGCGGCTTGTCTGGAGGAACTGCCG
ACCCTGCTCGAGGAGCTGGACGGACGCCTGCAACGCCTGGATGGCAGTTATCGGCCGGACAAGCCGTTCGTG
AAACTGAAGTTTCACGATTTCACCCAGACCACGGTGGAACAGTCCGGCGCCGGGCGCGACCTGGAGAGCTAC
CGGCAATTGCTCGGCCAGGCCTTTGCCCGTGGCAATCGTCCGGTGCGCCTGATCGGCGTTGGCGTGCGCCTG
CTCGACCTGCAGGGCGCCCACGAACAACTCAGGCTGTTCTGA
Translation:
MRKIIHIDCDCFYAALEMRDDPSLRGKALAVGGSPDKRGVVATCSYEARAYGVRSAMAMRTALKLCPDLLVV
RPRFDVYRAVSKQIHAIFRDYTDLIEPLSLDEAYLDVSASPHFAGSATRIAQDIRRRVAEELHITVSAGVAP
NKFLAKIASDWRKPDGLFVITPEQVDGFVAELPVAKLHGVGKVTAERLARMGIRTCADLRQGSKLSLVREFG
SFGERLWGLAHGIDERPVEVDSRRQSVSVECTFDRDLPDLAACLEELPTLLEELDGRLQRLDGSYRPDKPFV
KLKFHDFTQTTVEQSGAGRDLESYRQLLGQAFARGNRPVRLIGVGVRLLDLQGAHEQLRLF*
AnnotationID:1931GeneID:1922
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:56
Gene Name:dinP
Confidence Code:2
GeneProduct:DNA damage inducible protein P
Cell Localization:()
Synonyms:PA0923, dinB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:DinB
Functional Category Confidence Code:5
COGs:COG0389, pfam00817
Secondary Functional Category(ies):Adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair. Score: 326, 3e-90
pfam00817, IMS, impB/mucB/samB family. These proteins are involved in UV protection. Score: 272, 3e-74






   
Genomic Context:






   
Comment:


















    ReferenceID:14453




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20994




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3377
                           PA0923_tr
                           translation of PA0923
                           349
                           99.99
                           99.99
                           0
                           1789.0
     

     
     
104445
                           gb|AAG04312.1|AE004526_7
                           (AE004526) DNA damage inducible protein P [Pseudomonas aeruginosa PAO1]
                           349
                           99.71
                           99.99
                           0
                           1786.0
     

     
     
104446
                           gb|AAN66827.1|AE016311_7
                           (AE016778) DNA-damage-inducible protein P [Pseudomonas putida KT2440]
                           354
                           76.27
                           87.57
                           5
                           1431.0
     

     
     
104447
                           gb|AAO57449.1|
                           (AE016870) DNA polymerase IV [Pseudomonas syringae pv. tomato str. DC3000]
                           353
                           75.92
                           87.53
                           4
                           1420.0
     

     
     
104449
                           emb|CAD15289.1|
                           (AL646065) PROBABLE DNA-DAMAGE-INDUCIBLE PROTEIN P [Ralstonia solanacearum]
                           362
                           57.45
                           67.67
                           13
                           1002.0
     

     






      

          
GC ORFID: 44924How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0923Glimmer Score: 

          
Start: 310300Stop: 311349

          
Length: 1050


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0923 translation of PA0923Homolog Bit Score 693.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4674 (ORF: BLASTX 556.0), t_PA0923 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGAAAATCATCCATATAGACTGCGACTGTTTCTACGCCGCCCTCGAGATGCGCGACGACCCCAGCCTG 
CGCGGCAAGGCGCTGGCGGTTGGCGGTTCGCCGGACAAGCGCGGAGTGGTCGCCACTTGCAGCTACGAGGCG 
CGGGCCTATGGCGTGCGCTCGGCGATGGCCATGCGCACGGCGCTCAAGCTGTGTCCCGATCTCCTGGTGGTG 
CGCCCGCGTTTCGATGTCTACCGGGCGGTGTCGAAGCAGATCCATGCGATCTTCCGCGACTATACCGATCTG 
ATCGAGCCGCTTTCGCTGGACGAGGCCTACCTGGACGTCAGCGCTTCGCCGCATTTCGCCGGTAGCGCCACG 
CGGATCGCCCAGGACATCCGCCGCCGGGTGGCCGAGGAACTGCACATCACCGTTTCGGCGGGCGTCGCGCCG 
AACAAGTTCCTGGCCAAGATCGCCAGCGACTGGCGCAAGCCGGACGGGCTGTTTGTGATTACCCCGGAGCAG 
GTCGACGGGTTCGTCGCCGAGTTGCCGGTGGCCAAGTTGCATGGCGTCGGCAAGGTCACGGCGGAGCGCCTG 
GCGCGGATGGGCATCCGCACCTGCGCCGACCTGCGCCAGGGCAGCAAGCTGAGCCTGGTGCGCGAGTTCGGC 
AGCTTCGGCGAACGCCTGTGGGGACTGGCCCATGGTATCGACGAGCGACCGGTGGAAGTCGACAGCCGGCGC 
CAGTCGGTGAGCGTCGAATGTACCTTCGATCGCGACCTGCCGGACCTGGCGGCTTGTCTGGAGGAACTGCCG 
ACCCTGCTCGAGGAGCTGGACGGACGCCTGCAACGCCTGGATGGCAGTTATCGGCCGGACAAGCCGTTCGTG 
AAACTGAAGTTTCACGATTTCACCCAGACCACGGTGGAACAGTCCGGCGCCGGGCGCGACCTGGAGAGCTAC 
CGGCAATTGCTCGGCCAGGCCTTTGCCCGTGGCAATCGTCCGGTGCGCCTGATCGGCGTTGGCGTGCGCCTG 
CTCGACCTGCAGGGCGCCCACGAACAACTCAGGCTGTTCTGA