ViewGene
Locus Name:
GeneID:
Location:

GeneID:1921
TrivialName: PA14_07810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07810
PAO1 Ortholog Locus:PA0599
Sequence Length:1062
Protein Length:353
Start: 672984
Stop: 671923
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03988.1|AE004496_4 (AE004496) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 351/353 (99%), Positives = 351/353 (99%)
Sequence:
ATGCCGGCCTTCTCTCTACTGCCGAAGCCCTCCGCCCTGCTGCCCCTGCTATTGGCCGCCGCTTTCCTGCCG
CCGGCTTTCGTTCAAGCCGAAGAGGAGGCCGCCAAGGACCAGCCGCCGGCCCCCGTGGAACGCCCGGCGGTC
AGCGAGCGCAGCCAGGACGAGGCCAAGGGGCTGGAGCGCCAGTTGCCGGAGGACGGCCAGCAGATCCTCAAG
GCCGGCGACGAAAGCTTCCTCACCCTCTGGTTGCCAGCCAACACCGCCGAGGCCGAAGGTGTAGTGATCCTG
GTTCCCGGTGATGGCGAAAGTCCGGACTGGCCGCAAGCCATCGGCCCGCTAAGGCGCAAACTGCCGGATGCC
GGCTGGCAGACCCTGAGCCTGGCCCTGCCCGACCCGCAGAGCACCGCGCCGGTTACCCGCCCTGCGGAATCC
GCCGCCAGCGCCAGCGCCGACAAGGACGCCAGCGCCGCGGACAGCGCAAGCAAGCCTGACGTGAAAGGCGAA
AGCGGCAACGCGCCGGCGCCGGAAAGCACCGCCGAAGCCGGCAGCGGCGAACCGGCGCAGAGCGAGGACCAG
GCCCCTCCCCCAGCCATCGATCCGGTCGAGCAGCGCAAGGCGCACGCCGAACGGGTCATGGCGCGCCTGCAG
GCGAGCATCGACCTGGCCCTGCAGCACGAACCGAAAAGCGTCGTCCTGCTCGGTCATGGCACGGGCGCCTAT
TGGGCGGCACGCTACCTGGCGGAGAAGGAGCCTGCGGAAATCCACAACCTGCTGCTGGTTGCCGCGGAGGTA
CCGCGCGATTTTCGCCCGGCGCTGGAAGATATGGTGCCGAAGCTGAAACTGGCGACCGGCGACTTCTATTAC
CGCGACGCCCGCGCCGACCGCGAGGCGGCCAGGCTGCGCATGCAGGCCGGCAAGCGGCAGAAACACCCGGCC
TACGTACAAATCGCGATGCAGGCTCTACCGGCCGACCCCAAGGCGGAGCAGGAGCAACTGTACCGACGAATC
CGCGGCTGGCTCAGTCTTCACCTGCAGGCCGATGCGCAGAAACCTGCGGAGTGA
Translation:
MPAFSLLPKPSALLPLLLAAAFLPPAFVQAEEEAAKDQPPAPVERPAVSERSQDEAKGLERQLPEDGQQILK
AGDESFLTLWLPANTAEAEGVVILVPGDGESPDWPQAIGPLRRKLPDAGWQTLSLALPDPQSTAPVTRPAES
AASASADKDASAADSASKPDVKGESGNAPAPESTAEAGSGEPAQSEDQAPPPAIDPVEQRKAHAERVMARLQ
ASIDLALQHEPKSVVLLGHGTGAYWAARYLAEKEPAEIHNLLLVAAEVPRDFRPALEDMVPKLKLATGDFYY
RDARADREAARLRMQAGKRQKHPAYVQIAMQALPADPKAEQEQLYRRIRGWLSLHLQADAQKPAE*
AnnotationID:1930GeneID:1921
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 11:11:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0599
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3845




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20992




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1921
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3376
                           PA0599_tr
                           translation of PA0599
                           353
                           99.43
                           99.43
                           0
                           1791.0
     

     
     
104442
                           gb|AAG03988.1|AE004496_4
                           (AE004496) hypothetical protein PA0599 [Pseudomonas aeruginosa PAO1]
                           353
                           99.43
                           99.43
                           0
                           1791.0
     

     
     
104443
                           gb|AAN66038.1|AE016233_4
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           371
                           42.85
                           57.41
                           57
                           712.0
     

     
     
104444
                           gb|AAO54100.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           369
                           41.46
                           57.18
                           53
                           694.0
     

     






      

          
GC ORFID: 44923How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0599Glimmer Score: 

          
Start: 6474327Stop: 6473266

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0599 translation of PA0599Homolog Bit Score 694.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6751 (ORF: BLASTX 276.0), t_PA0599 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCCTTCTCTCTACTGCCGAAGCCCTCCGCCCTGCTGCCCCTGCTATTGGCCGCCGCTTTCCTGCCG 
CCGGCTTTCGTTCAAGCCGAAGAGGAGGCCGCCAAGGACCAGCCGCCGGCCCCCGTGGAACGCCCGGCGGTC 
AGCGAGCGCAGCCAGGACGAGGCCAAGGGGCTGGAGCGCCAGTTGCCGGAGGACGGCCAGCAGATCCTCAAG 
GCCGGCGACGAAAGCTTCCTCACCCTCTGGTTGCCAGCCAACACCGCCGAGGCCGAAGGTGTAGTGATCCTG 
GTTCCCGGTGATGGCGAAAGTCCGGACTGGCCGCAAGCCATCGGCCCGCTAAGGCGCAAACTGCCGGATGCC 
GGCTGGCAGACCCTGAGCCTGGCCCTGCCCGACCCGCAGAGCACCGCGCCGGTTACCCGCCCTGCGGAATCC 
GCCGCCAGCGCCAGCGCCGACAAGGACGCCAGCGCCGCGGACAGCGCAAGCAAGCCTGACGTGAAAGGCGAA 
AGCGGCAACGCGCCGGCGCCGGAAAGCACCGCCGAAGCCGGCAGCGGCGAACCGGCGCAGAGCGAGGACCAG 
GCCCCTCCCCCAGCCATCGATCCGGTCGAGCAGCGCAAGGCGCACGCCGAACGGGTCATGGCGCGCCTGCAG 
GCGAGCATCGACCTGGCCCTGCAGCACGAACCGAAAAGCGTCGTCCTGCTCGGTCATGGCACGGGCGCCTAT 
TGGGCGGCACGCTACCTGGCGGAGAAGGAGCCTGCGGAAATCCACAACCTGCTGCTGGTTGCCGCGGAGGTA 
CCGCGCGATTTTCGCCCGGCGCTGGAAGATATGGTGCCGAAGCTGAAACTGGCGACCGGCGACTTCTATTAC 
CGCGACGCCCGCGCCGACCGCGAGGCGGCCAGGCTGCGCATGCAGGCCGGCAAGCGGCAGAAACACCCGGCC 
TACGTACAAATCGCGATGCAGGCTCTACCGGCCGACCCCAAGGCGGAGCAGGAGCAACTGTACCGACGAATC 
CGCGGCTGGCTCAGTCTTCACCTGCAGGCCGATGCGCAGAAACCTGCGGAGTGA