ViewGene
Locus Name:
GeneID:
Location:

GeneID:1920
TrivialName: PA14_04840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04840
PAO1 Ortholog Locus:PA0368
Sequence Length:999
Protein Length:332
Start: 428075
Stop: 427077
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03757.1|AE004474_9 (AE004474) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/332 (100%), Positives = 332/332 (100%)
Sequence:
ATGACCGCGTCCCCGACCTTCCAGCCCGCCTGGTGGCTGCCCAATCCGCACCTGCAGACCCTGTGGAGCCCG
TTCTTCCGCCGCGGGCCGACCCTGGAACGGCAGCGCGAACGCCTGTGGCTGGCCGATGGCGACTTCATCGAC
CTCGACTGGGCCGGCCCGCACGATGCCGAAACCCCGCTGGTGCTGGCACTGCACGGCCTCACCGGGTCATCC
TCGTCACACTACATCCTCGGTCTGCAGCGCGCCCTGCTGGAGCGCGGCTGGGCCAGCGTGGCGCTGAACTGG
CGCGGTTGCTCGGGGGAGCCGAACCGCCTGCCGCGCGGCTACCATTCCGGGGTCAGCGACGACCTCGCCGAG
GTGGTCGCGCACCTGCGCGCCAGGCGCCCGCAAGCGCCGCTGTACGCGGTCGGCTATTCGCTGGGCGGCAAC
GTGCTGCTCAAGTACCTGGGCGAAACCGCTGGGGACTGCCCGCTGCTCGGCGGCGTCGCGGTGTCGGTGCCG
TTCCGCCTGGACGAGTGCGCCGACCGCATCGGCCTGGGCTTTTCCCGGGTCTACCAGGCGCACTTCATGAAG
GCCATGCTGGCCTACGTGCAGGACAAGCAGCGGCTGTTCGGCGAGCAGGGCCAGGCGGAAGGCCTGGCCGCC
CTGCAACGCCTCGGTCCGCTGGAGGGCATGCGCACCTTCTGGGACTTCGACGGCCGGGTCACCGCGCCGCTG
CACGGCTTCGCCGACGCCAGGGATTACTATCGGCGCGCGTCCAGCCGCTACTACCTGCCGGACATCCGCACG
CCGAGCCTGATCATCCATTCCAGCGACGACCCCTTCGTGTTCGCCCGCAGCCTGCCCGATCGCAGCGAACTG
GCACCCTGCACCGAGCTGGAACTGCACGCCCGCGGCGGTCACGTCGGCTTCGTCGACGGCTCTCCGCGCCAG
CCCACCTACTACTTGGAACGACGCATCCCCGACTGGCTGGAGGCCCGCCTGCGGCAGCACTGA
Translation:
MTASPTFQPAWWLPNPHLQTLWSPFFRRGPTLERQRERLWLADGDFIDLDWAGPHDAETPLVLALHGLTGSS
SSHYILGLQRALLERGWASVALNWRGCSGEPNRLPRGYHSGVSDDLAEVVAHLRARRPQAPLYAVGYSLGGN
VLLKYLGETAGDCPLLGGVAVSVPFRLDECADRIGLGFSRVYQAHFMKAMLAYVQDKQRLFGEQGQAEGLAA
LQRLGPLEGMRTFWDFDGRVTAPLHGFADARDYYRRASSRYYLPDIRTPSLIIHSSDDPFVFARSLPDRSEL
APCTELELHARGGHVGFVDGSPRQPTYYLERRIPDWLEARLRQH*
AnnotationID:1929GeneID:1920
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:42
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0368
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0429
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53965.1| (AE016857) hydrolase, alpha/beta fold family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 337

 Score =  484 bits (1245), Expect = e-136
 Identities = 232/321 (72%), Positives = 256/321 (79%)

>gb|AAN70682.1|AE016711_10 (AE016793) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 330

 Score =  475 bits (1222), Expect = e-133
 Identities = 230/320 (71%), Positives = 257/320 (80%)






 
Structural Features:
COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold
CD-Length = 345 residues,  96.2% aligned
Score =  396 bits (1019), Expect = 2e-111
Identities = 160/338 (47%), Positives = 198/338 (58%), Gaps = 12/338 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20990




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33705




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1920_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1920
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3375
                           PA0368_tr
                           translation of PA0368
                           332
                           99.99
                           99.99
                           0
                           1791.0
     

     
     
104424
                           gb|AAG03757.1|AE004474_9
                           (AE004474) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           332
                           99.99
                           99.99
                           0
                           1791.0
     

     
     
104425
                           gb|AAO53965.1|
                           (AE016857) hydrolase, alpha/beta fold family [Pseudomonas syringae pv. tomato str. DC3000]
                           337
                           69.13
                           76.85
                           5
                           1243.0
     

     
     
104426
                           gb|AAN70682.1|AE016711_10
                           (AE016793) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           333
                           69.06
                           77.77
                           4
                           1211.0
     

     
     
104427
                           gb|AAN53956.1|AE015533_7
                           (AE015533) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           339
                           46.01
                           58.70
                           19
                           719.0
     

     






      

          
GC ORFID: 44922How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0368Glimmer Score: 

          
Start: 6229417Stop: 6228419

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0368 translation of PA0368Homolog Bit Score 694.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6823 (ORF: BLASTX 473.0), t_PA0368 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCGTCCCCGACCTTCCAGCCCGCCTGGTGGCTGCCCAATCCGCACCTGCAGACCCTGTGGAGCCCG 
TTCTTCCGCCGCGGGCCGACCCTGGAACGGCAGCGCGAACGCCTGTGGCTGGCCGATGGCGACTTCATCGAC 
CTCGACTGGGCCGGCCCGCACGATGCCGAAACCCCGCTGGTGCTGGCACTGCACGGCCTCACCGGGTCATCC 
TCGTCACACTACATCCTCGGTCTGCAGCGCGCCCTGCTGGAGCGCGGCTGGGCCAGCGTGGCGCTGAACTGG 
CGCGGTTGCTCGGGGGAGCCGAACCGCCTGCCGCGCGGCTACCATTCCGGGGTCAGCGACGACCTCGCCGAG 
GTGGTCGCGCACCTGCGCGCCAGGCGCCCGCAAGCGCCGCTGTACGCGGTCGGCTATTCGCTGGGCGGCAAC 
GTGCTGCTCAAGTACCTGGGCGAAACCGCTGGGGACTGCCCGCTGCTCGGCGGCGTCGCGGTGTCGGTGCCG 
TTCCGCCTGGACGAGTGCGCCGACCGCATCGGCCTGGGCTTTTCCCGGGTCTACCAGGCGCACTTCATGAAG 
GCCATGCTGGCCTACGTGCAGGACAAGCAGCGGCTGTTCGGCGAGCAGGGCCAGGCGGAAGGCCTGGCCGCC 
CTGCAACGCCTCGGTCCGCTGGAGGGCATGCGCACCTTCTGGGACTTCGACGGCCGGGTCACCGCGCCGCTG 
CACGGCTTCGCCGACGCCAGGGATTACTATCGGCGCGCGTCCAGCCGCTACTACCTGCCGGACATCCGCACG 
CCGAGCCTGATCATCCATTCCAGCGACGACCCCTTCGTGTTCGCCCGCAGCCTGCCCGATCGCAGCGAACTG 
GCACCCTGCACCGAGCTGGAACTGCACGCCCGCGGCGGTCACGTCGGCTTCGTCGACGGCTCTCCGCGCCAG 
CCCACCTACTACTTGGAACGACGCATCCCCGACTGGCTGGAGGCCCGCCTGCGGCAGCACTGA