ViewGene
Locus Name:
GeneID:
Location:

GeneID:192
TrivialName: PA14_07820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07820
PAO1 Ortholog Locus:PA0600
Sequence Length:2394
Protein Length:797
Start: 673136
Stop: 675529
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03989.1|AE004496_5 (AE004496) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 793/797 (99%), Positives = 793/797 (99%)
Sequence:
ATGTTGCGTCGTTGCTGTCTGCTCTTCTTCTGTCTGCTGTTGAGCCTGCCCGTGCGAGCGGAGGAGTCGGTC
GCCTTGCCGCTGACGGCAGAACTACGGACCTGGCTGGCGGAGCATCGGGAATTGCGCGTCGGGGTGGTCACC
GAAGCGCCCTATGCCCAGTACGACCGCCGCCTGCAACAGTATTCCGGGGCCAACGTGGAGCTGATGGGCTGG
CTGGCCACGGCAATGCAGGTGACCTTGCGGTGGCAGGGCTATCCCGACCAGGCGGCGCTCGACGATGCCCTG
CGCGCTGGGCGCGTGGATATCGCTCCCGGCCTCAGCCAGACCCCAGCCGGGCTGCGCTTGTGGCTGTTCTCC
GATCCCTACCTGCGGGTTTCCCGGCTGGTGGTGGGGAAGCGCGATGGCAGCGGCAGCGTCGAATTGGAGCAA
CTGGAGCGCGATACCCGGGTTGCCGTGCGTGCCGGCAGTTCGGTAGCCGACTACCTCAGCAGCACCTATAGC
AGCCTGCAATGGGTGTCGGCCGATTCCGAACGCGAGGTGCTGCGCGCCGTGCTCGCCGGACAGGCACGCTAC
GCGGTGATCGACGAAGCGCAACTCAGTCGCCTGACCCGCGAACCGGAGTTCGCCGAGCTAGCGGTGGTTGGC
GATATCGGCTACCCGCAGCTGCTACGGGTGGCGACCCGTCGCGACTGGCCGGAACTGGCGATGGTGGTCGAC
CAGGCGTTGCGCTCGCTGCCGCGCAAGTCCCTGGACCAGTTGCACGAGCGCTGGTTGCAACCCAAGTATCCG
CGCCTCGGCGAGTCGCCGGGGTTCTGGCAGAACCTGTCGATCCTCCTCGGCCTGCTGCTGGCCGGCGCGCTG
GCGGCGGTGTTCCTCCAGCGGCGCCAGCAGCATGCGCTGGAAGCCCGGCTGTACGGCGCCCGCCGCGACCTG
GAGCTGCGCCAGGCGGCCGAGGAGGCGCTGCGCCTGACCCAGTTCTCCATCGACAACAGCACCCTGGGCATC
CTCTGGGTCAACTGGGACAGCCGCGTACGCTACGCCAACCGCGCCGCCGAACAGATGCTCGGCCATGCCGAC
GGCCAACTCGTGGACCGTCCGCTGGCCGACTTCGAGCCCGGCCTGGACATGGACCGCTGGTTGAATCTTTGG
CGTCGTGCGCGCAATAGCGAGGAGGGCCCGCTCAGCTTCGAGACCCGCTGCCTGCGCGCCGACGGCAGTTGG
CTGCCGGCCGACGTCTCGCTTAGCTTCCTGCGCTTCGGCACGTCCGAGTATCTGGTGGTGTTCCTCAGCGAC
GTCACCGAGCGCCGCCGTGCCCGCGAGGCATTGCAGGAAAGCGAGGCGCGGATGAAGGGCATCGCCTCCAAC
GTGCCGGGCATGGTCTTCCGCCTGGAGCGCCCGCGGGCCGGCGCGTTTTCCGACTTCGCCTATATCAGCGAG
GGCAGCGAGGCGCTGGTCGGCTACAGCGCTCTCGAGCTGATCGAGAGCGGCCGCGGCATTCGTGGCCTGGTC
CATCCCGACGACCGCGAGCGCTACTGGTCGAGCCAGATGGCTGCCCTCGACGAGAATCGCGACTGGCATTGG
CAGGGCCGCATCCTCACCCGCCAGGGCGAATTGCGCTGGGCCGACATCAAGGCTTCGGCGCGCTGTTTCGAG
GATGGTCGCGCGGTCTGGGACGGGGTGGTCTGGGACATCACCGCGAACAAGCAGATCGAACTCGAACTCGGC
GAGTCGCGCGCCCAGCTCCGCGAGCTGTCGGCGCACCTGGAGTCGGTGCGGGAGGAGGAGAAGGCGCGTATC
GCCCGCGAGGTCCATGATGAGCTGGGCCAGGTGCTGACGGTGCTGAAGCTGGAAACCTCGATGTGCGAGCTG
GCCTATGCCGATGCCCAGGAGGGCCTGCGCGAACGCCTGGGCAACATGAAAAAGCTGATCGCCCAGTTGTTC
CAGCTGGTGCGCGACGTGGCCACCGCACTGCGCCCGCCGATCCTCGACGCCGGAATCGGCTCGGCGGTGGAG
TGGCAGGCGCGGCGCTTCGAGGCGCGCACGCAGATTCCCTGCCTGGTGGAGGTGCCGGAGAACTCGCCGCAG
TTGGTCGACGCCAAGGCTATCGGCCTGTTCCGCATCCTCCAGGAGGCGTTGACCAATGTCATGCGGCATGCC
GAGGCGCATACTGTGCAACTGCGTCTGCTGCGCGAGGGCGACGAGCTGTGCCTGAGCGTCAGCGACGACGGT
CGCGGGTTCGATGTTGCCACGGTGGGGCGTGGCAGTTCCTTCGGCCTGGTCGGCATGCGTGAGCGGGTGCTG
ATGATGGGCGGTACGCTGGACATCGACAGTGCCCCCGGCGAGGGCACCACGCTCAGCGTGAGGATTCCGCTG
GGCGTCGCGAGCCCGTGA
Translation:
MLRRCCLLFFCLLLSLPVRAEESVALPLTAELRTWLAEHRELRVGVVTEAPYAQYDRRLQQYSGANVELMGW
LATAMQVTLRWQGYPDQAALDDALRAGRVDIAPGLSQTPAGLRLWLFSDPYLRVSRLVVGKRDGSGSVELEQ
LERDTRVAVRAGSSVADYLSSTYSSLQWVSADSEREVLRAVLAGQARYAVIDEAQLSRLTREPEFAELAVVG
DIGYPQLLRVATRRDWPELAMVVDQALRSLPRKSLDQLHERWLQPKYPRLGESPGFWQNLSILLGLLLAGAL
AAVFLQRRQQHALEARLYGARRDLELRQAAEEALRLTQFSIDNSTLGILWVNWDSRVRYANRAAEQMLGHAD
GQLVDRPLADFEPGLDMDRWLNLWRRARNSEEGPLSFETRCLRADGSWLPADVSLSFLRFGTSEYLVVFLSD
VTERRRAREALQESEARMKGIASNVPGMVFRLERPRAGAFSDFAYISEGSEALVGYSALELIESGRGIRGLV
HPDDRERYWSSQMAALDENRDWHWQGRILTRQGELRWADIKASARCFEDGRAVWDGVVWDITANKQIELELG
ESRAQLRELSAHLESVREEEKARIAREVHDELGQVLTVLKLETSMCELAYADAQEGLRERLGNMKKLIAQLF
QLVRDVATALRPPILDAGIGSAVEWQARRFEARTQIPCLVEVPENSPQLVDAKAIGLFRILQEALTNVMRHA
EAHTVQLRLLREGDELCLSVSDDGRGFDVATVGRGSSFGLVGMRERVLMMGGTLDIDSAPGEGTTLSVRIPL
GVASP*
AnnotationID:202GeneID:192
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative histidine kinase
Cell Localization:()
Synonyms:PA0600
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4585
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66039.1|AE016233_5 (AE016775) sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 795

 Score =  996 bits (2576), Expect = 0.0
 Identities = 514/792 (64%), Positives = 618/792 (78%), Gaps = 5/792 (0%)

>gb|AAO54101.1| (AE016857) sensory box histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 671

 Score =  514 bits (1323), Expect = e-144
 Identities = 270/462 (58%), Positives = 331/462 (71%), Gaps = 5/462 (1%)






 
Structural Features:
COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 365 residues,  99.7% aligned
Score =  197 bits (500), Expect = 6e-51
Identities = 100/375 (26%), Positives = 151/375 (40%), Gaps = 13/375 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17529




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33888




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:192_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:192
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
332
                           PA0600_tr
                           translation of PA0600
                           797
                           99.49
                           99.49
                           0
                           4046.0
     

     
     
21223
                           gb|AAG03989.1|AE004496_5
                           (AE004496) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           797
                           99.49
                           99.49
                           0
                           4046.0
     

     
     
21224
                           gb|AAN66039.1|AE016233_5
                           (AE016775) sensory box histidine kinase [Pseudomonas putida KT2440]
                           801
                           64.41
                           77.40
                           10
                           2579.0
     

     
     
21225
                           gb|AAO54101.1|
                           (AE016857) sensory box histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           812
                           53.57
                           63.05
                           156
                           2044.0
     

     






      

          
GC ORFID: 43194How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0600Glimmer Score: 

          
Start: 6474479Stop: 6476872

          
Length: 2394


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0600 translation of PA0600Homolog Bit Score 1563.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5916 (ORF: BLASTX 321.0), t_PA0600 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCGTCGTTGCTGTCTGCTCTTCTTCTGTCTGCTGTTGAGCCTGCCCGTGCGAGCGGAGGAGTCGGTC 
GCCTTGCCGCTGACGGCAGAACTACGGACCTGGCTGGCGGAGCATCGGGAATTGCGCGTCGGGGTGGTCACC 
GAAGCGCCCTATGCCCAGTACGACCGCCGCCTGCAACAGTATTCCGGGGCCAACGTGGAGCTGATGGGCTGG 
CTGGCCACGGCAATGCAGGTGACCTTGCGGTGGCAGGGCTATCCCGACCAGGCGGCGCTCGACGATGCCCTG 
CGCGCTGGGCGCGTGGATATCGCTCCCGGCCTCAGCCAGACCCCAGCCGGGCTGCGCTTGTGGCTGTTCTCC 
GATCCCTACCTGCGGGTTTCCCGGCTGGTGGTGGGGAAGCGCGATGGCAGCGGCAGCGTCGAATTGGAGCAA 
CTGGAGCGCGATACCCGGGTTGCCGTGCGTGCCGGCAGTTCGGTAGCCGACTACCTCAGCAGCACCTATAGC 
AGCCTGCAATGGGTGTCGGCCGATTCCGAACGCGAGGTGCTGCGCGCCGTGCTCGCCGGACAGGCACGCTAC 
GCGGTGATCGACGAAGCGCAACTCAGTCGCCTGACCCGCGAACCGGAGTTCGCCGAGCTAGCGGTGGTTGGC 
GATATCGGCTACCCGCAGCTGCTACGGGTGGCGACCCGTCGCGACTGGCCGGAACTGGCGATGGTGGTCGAC 
CAGGCGTTGCGCTCGCTGCCGCGCAAGTCCCTGGACCAGTTGCACGAGCGCTGGTTGCAACCCAAGTATCCG 
CGCCTCGGCGAGTCGCCGGGGTTCTGGCAGAACCTGTCGATCCTCCTCGGCCTGCTGCTGGCCGGCGCGCTG 
GCGGCGGTGTTCCTCCAGCGGCGCCAGCAGCATGCGCTGGAAGCCCGGCTGTACGGCGCCCGCCGCGACCTG 
GAGCTGCGCCAGGCGGCCGAGGAGGCGCTGCGCCTGACCCAGTTCTCCATCGACAACAGCACCCTGGGCATC 
CTCTGGGTCAACTGGGACAGCCGCGTACGCTACGCCAACCGCGCCGCCGAACAGATGCTCGGCCATGCCGAC 
GGCCAACTCGTGGACCGTCCGCTGGCCGACTTCGAGCCCGGCCTGGACATGGACCGCTGGTTGAATCTTTGG 
CGTCGTGCGCGCAATAGCGAGGAGGGCCCGCTCAGCTTCGAGACCCGCTGCCTGCGCGCCGACGGCAGTTGG 
CTGCCGGCCGACGTCTCGCTTAGCTTCCTGCGCTTCGGCACGTCCGAGTATCTGGTGGTGTTCCTCAGCGAC 
GTCACCGAGCGCCGCCGTGCCCGCGAGGCATTGCAGGAAAGCGAGGCGCGGATGAAGGGCATCGCCTCCAAC 
GTGCCGGGCATGGTCTTCCGCCTGGAGCGCCCGCGGGCCGGCGCGTTTTCCGACTTCGCCTATATCAGCGAG 
GGCAGCGAGGCGCTGGTCGGCTACAGCGCTCTCGAGCTGATCGAGAGCGGCCGCGGCATTCGTGGCCTGGTC 
CATCCCGACGACCGCGAGCGCTACTGGTCGAGCCAGATGGCTGCCCTCGACGAGAATCGCGACTGGCATTGG 
CAGGGCCGCATCCTCACCCGCCAGGGCGAATTGCGCTGGGCCGACATCAAGGCTTCGGCGCGCTGTTTCGAG 
GATGGTCGCGCGGTCTGGGACGGGGTGGTCTGGGACATCACCGCGAACAAGCAGATCGAACTCGAACTCGGC 
GAGTCGCGCGCCCAGCTCCGCGAGCTGTCGGCGCACCTGGAGTCGGTGCGGGAGGAGGAGAAGGCGCGTATC 
GCCCGCGAGGTCCATGATGAGCTGGGCCAGGTGCTGACGGTGCTGAAGCTGGAAACCTCGATGTGCGAGCTG 
GCCTATGCCGATGCCCAGGAGGGCCTGCGCGAACGCCTGGGCAACATGAAAAAGCTGATCGCCCAGTTGTTC 
CAGCTGGTGCGCGACGTGGCCACCGCACTGCGCCCGCCGATCCTCGACGCCGGAATCGGCTCGGCGGTGGAG 
TGGCAGGCGCGGCGCTTCGAGGCGCGCACGCAGATTCCCTGCCTGGTGGAGGTGCCGGAGAACTCGCCGCAG 
TTGGTCGACGCCAAGGCTATCGGCCTGTTCCGCATCCTCCAGGAGGCGTTGACCAATGTCATGCGGCATGCC 
GAGGCGCATACTGTGCAACTGCGTCTGCTGCGCGAGGGCGACGAGCTGTGCCTGAGCGTCAGCGACGACGGT 
CGCGGGTTCGATGTTGCCACGGTGGGGCGTGGCAGTTCCTTCGGCCTGGTCGGCATGCGTGAGCGGGTGCTG 
ATGATGGGCGGTACGCTGGACATCGACAGTGCCCCCGGCGAGGGCACCACGCTCAGCGTGAGGATTCCGCTG 
GGCGTCGCGAGCCCGTGA